Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22530 and BWI76_RS22535 overlap by 1 nucleotides BWI76_RS22535 and BWI76_RS22540 overlap by 4 nucleotides
BWI76_RS22530: BWI76_RS22530 - macrolide ABC transporter permease/ATP-binding protein MacB, at 4,696,113 to 4,698,056
_RS22530
BWI76_RS22535: BWI76_RS22535 - membrane fusion protein of a type I secretion system, at 4,698,056 to 4,699,216
_RS22535
BWI76_RS22540: BWI76_RS22540 - ABC transporter ATP-binding protein/permease, at 4,699,213 to 4,701,324
_RS22540
Position (kb) 4698
4699
4700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4697.212 kb on + strand, within BWI76_RS22530 at 4697.371 kb on + strand, within BWI76_RS22530 at 4697.526 kb on + strand, within BWI76_RS22530 at 4697.637 kb on - strand, within BWI76_RS22530 at 4697.759 kb on - strand, within BWI76_RS22530 at 4697.800 kb on - strand, within BWI76_RS22530 at 4698.030 kb on + strand at 4698.171 kb on - strand at 4698.195 kb on + strand, within BWI76_RS22535 at 4698.260 kb on - strand, within BWI76_RS22535 at 4698.260 kb on - strand, within BWI76_RS22535 at 4698.356 kb on + strand, within BWI76_RS22535 at 4698.477 kb on - strand, within BWI76_RS22535 at 4698.536 kb on - strand, within BWI76_RS22535 at 4698.536 kb on - strand, within BWI76_RS22535 at 4698.625 kb on + strand, within BWI76_RS22535 at 4698.668 kb on - strand, within BWI76_RS22535 at 4698.671 kb on + strand, within BWI76_RS22535 at 4698.764 kb on - strand, within BWI76_RS22535 at 4698.766 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.784 kb on + strand, within BWI76_RS22535 at 4698.792 kb on - strand, within BWI76_RS22535 at 4698.792 kb on - strand, within BWI76_RS22535 at 4698.826 kb on - strand, within BWI76_RS22535 at 4698.832 kb on - strand, within BWI76_RS22535 at 4698.952 kb on - strand, within BWI76_RS22535 at 4698.999 kb on + strand, within BWI76_RS22535 at 4698.999 kb on + strand, within BWI76_RS22535 at 4699.193 kb on - strand at 4699.273 kb on - strand at 4699.309 kb on - strand at 4699.330 kb on - strand at 4699.409 kb on - strand at 4699.467 kb on + strand, within BWI76_RS22540 at 4699.475 kb on - strand, within BWI76_RS22540 at 4699.477 kb on - strand, within BWI76_RS22540 at 4699.572 kb on - strand, within BWI76_RS22540 at 4699.572 kb on - strand, within BWI76_RS22540 at 4699.672 kb on - strand, within BWI76_RS22540 at 4699.723 kb on + strand, within BWI76_RS22540 at 4699.891 kb on - strand, within BWI76_RS22540 at 4699.977 kb on - strand, within BWI76_RS22540 at 4700.012 kb on - strand, within BWI76_RS22540 at 4700.162 kb on + strand, within BWI76_RS22540 at 4700.198 kb on - strand, within BWI76_RS22540
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,697,212 + BWI76_RS22530 0.57 -0.3 4,697,371 + BWI76_RS22530 0.65 +0.9 4,697,526 + BWI76_RS22530 0.73 +0.2 4,697,637 - BWI76_RS22530 0.78 +0.1 4,697,759 - BWI76_RS22530 0.85 +0.5 4,697,800 - BWI76_RS22530 0.87 +1.2 4,698,030 + -2.1 4,698,171 - +2.6 4,698,195 + BWI76_RS22535 0.12 +0.1 4,698,260 - BWI76_RS22535 0.18 +0.1 4,698,260 - BWI76_RS22535 0.18 -0.4 4,698,356 + BWI76_RS22535 0.26 -2.3 4,698,477 - BWI76_RS22535 0.36 +0.5 4,698,536 - BWI76_RS22535 0.41 -0.7 4,698,536 - BWI76_RS22535 0.41 +0.6 4,698,625 + BWI76_RS22535 0.49 +0.7 4,698,668 - BWI76_RS22535 0.53 +0.9 4,698,671 + BWI76_RS22535 0.53 -0.4 4,698,764 - BWI76_RS22535 0.61 -0.2 4,698,766 + BWI76_RS22535 0.61 +0.6 4,698,784 + BWI76_RS22535 0.63 +0.6 4,698,784 + BWI76_RS22535 0.63 -1.2 4,698,784 + BWI76_RS22535 0.63 +0.9 4,698,792 - BWI76_RS22535 0.63 -2.4 4,698,792 - BWI76_RS22535 0.63 -3.3 4,698,826 - BWI76_RS22535 0.66 -0.1 4,698,832 - BWI76_RS22535 0.67 +0.4 4,698,952 - BWI76_RS22535 0.77 +1.2 4,698,999 + BWI76_RS22535 0.81 -0.8 4,698,999 + BWI76_RS22535 0.81 +0.9 4,699,193 - -0.2 4,699,273 - -1.4 4,699,309 - +0.4 4,699,330 - +0.0 4,699,409 - +0.7 4,699,467 + BWI76_RS22540 0.12 +0.6 4,699,475 - BWI76_RS22540 0.12 -1.5 4,699,477 - BWI76_RS22540 0.12 -0.5 4,699,572 - BWI76_RS22540 0.17 -0.9 4,699,572 - BWI76_RS22540 0.17 +0.2 4,699,672 - BWI76_RS22540 0.22 +0.4 4,699,723 + BWI76_RS22540 0.24 -3.3 4,699,891 - BWI76_RS22540 0.32 -0.1 4,699,977 - BWI76_RS22540 0.36 -0.6 4,700,012 - BWI76_RS22540 0.38 +2.0 4,700,162 + BWI76_RS22540 0.45 -3.0 4,700,198 - BWI76_RS22540 0.47 +0.0
Or see this region's nucleotide sequence