Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14080

Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotidesBWI76_RS14075 and BWI76_RS14080 are separated by 11 nucleotidesBWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotidesBWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotides BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952 _RS14070 BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605 _RS14075 BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724 _RS14080 BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163 _RS14085 BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740 _RS14090 Position (kb) 2941 2942 2943 2944 2945Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2940.760 kb on - strand, within BWI76_RS14070at 2941.102 kb on + strand, within BWI76_RS14075at 2941.246 kb on - strand, within BWI76_RS14075at 2941.809 kb on + strandat 2942.107 kb on + strand, within BWI76_RS14080at 2942.131 kb on + strand, within BWI76_RS14080at 2942.308 kb on + strand, within BWI76_RS14080at 2942.628 kb on - strand, within BWI76_RS14080at 2942.628 kb on - strand, within BWI76_RS14080at 2942.630 kb on + strand, within BWI76_RS14080at 2942.708 kb on + strand, within BWI76_RS14080at 2942.775 kb on + strand, within BWI76_RS14080at 2943.219 kb on - strand, within BWI76_RS14080at 2943.229 kb on - strand, within BWI76_RS14080at 2943.444 kb on + strand, within BWI76_RS14080at 2943.529 kb on + strand, within BWI76_RS14080at 2944.011 kb on - strand, within BWI76_RS14080at 2944.162 kb on - strand, within BWI76_RS14080at 2944.337 kb on + strand, within BWI76_RS14080at 2944.510 kb on + strandat 2944.734 kb on + strandat 2945.332 kb on + strandat 2945.407 kb on - strand, within BWI76_RS14090at 2945.451 kb on - strand, within BWI76_RS14090at 2945.573 kb on - strand, within BWI76_RS14090

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
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2,940,760 - BWI76_RS14070 0.66 +1.6
2,941,102 + BWI76_RS14075 0.21 -0.8
2,941,246 - BWI76_RS14075 0.43 -0.5
2,941,809 + +0.1
2,942,107 + BWI76_RS14080 0.16 -0.2
2,942,131 + BWI76_RS14080 0.17 -0.1
2,942,308 + BWI76_RS14080 0.22 -0.9
2,942,628 - BWI76_RS14080 0.33 +0.1
2,942,628 - BWI76_RS14080 0.33 +0.8
2,942,630 + BWI76_RS14080 0.33 -1.3
2,942,708 + BWI76_RS14080 0.35 -0.6
2,942,775 + BWI76_RS14080 0.37 -2.5
2,943,219 - BWI76_RS14080 0.52 +1.8
2,943,229 - BWI76_RS14080 0.52 -1.6
2,943,444 + BWI76_RS14080 0.59 +1.0
2,943,529 + BWI76_RS14080 0.62 -0.1
2,944,011 - BWI76_RS14080 0.77 -2.8
2,944,162 - BWI76_RS14080 0.82 -1.1
2,944,337 + BWI76_RS14080 0.88 +1.8
2,944,510 + -2.8
2,944,734 + +1.0
2,945,332 + +0.3
2,945,407 - BWI76_RS14090 0.26 -3.7
2,945,451 - BWI76_RS14090 0.36 +0.4
2,945,573 - BWI76_RS14090 0.63 +1.4

Or see this region's nucleotide sequence