Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotides BWI76_RS14075 and BWI76_RS14080 are separated by 11 nucleotides BWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotides BWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotides
BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952
_RS14070
BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605
_RS14075
BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724
_RS14080
BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163
_RS14085
BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740
_RS14090
Position (kb)
2941
2942
2943
2944
2945 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2940.760 kb on - strand, within BWI76_RS14070 at 2941.102 kb on + strand, within BWI76_RS14075 at 2941.246 kb on - strand, within BWI76_RS14075 at 2941.809 kb on + strand at 2942.107 kb on + strand, within BWI76_RS14080 at 2942.131 kb on + strand, within BWI76_RS14080 at 2942.308 kb on + strand, within BWI76_RS14080 at 2942.628 kb on - strand, within BWI76_RS14080 at 2942.628 kb on - strand, within BWI76_RS14080 at 2942.630 kb on + strand, within BWI76_RS14080 at 2942.708 kb on + strand, within BWI76_RS14080 at 2942.775 kb on + strand, within BWI76_RS14080 at 2943.219 kb on - strand, within BWI76_RS14080 at 2943.229 kb on - strand, within BWI76_RS14080 at 2943.444 kb on + strand, within BWI76_RS14080 at 2943.529 kb on + strand, within BWI76_RS14080 at 2944.011 kb on - strand, within BWI76_RS14080 at 2944.162 kb on - strand, within BWI76_RS14080 at 2944.337 kb on + strand, within BWI76_RS14080 at 2944.510 kb on + strand at 2944.734 kb on + strand at 2945.332 kb on + strand at 2945.407 kb on - strand, within BWI76_RS14090 at 2945.451 kb on - strand, within BWI76_RS14090 at 2945.573 kb on - strand, within BWI76_RS14090
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 2,940,760 - BWI76_RS14070 0.66 +1.6 2,941,102 + BWI76_RS14075 0.21 -0.8 2,941,246 - BWI76_RS14075 0.43 -0.5 2,941,809 + +0.1 2,942,107 + BWI76_RS14080 0.16 -0.2 2,942,131 + BWI76_RS14080 0.17 -0.1 2,942,308 + BWI76_RS14080 0.22 -0.9 2,942,628 - BWI76_RS14080 0.33 +0.1 2,942,628 - BWI76_RS14080 0.33 +0.8 2,942,630 + BWI76_RS14080 0.33 -1.3 2,942,708 + BWI76_RS14080 0.35 -0.6 2,942,775 + BWI76_RS14080 0.37 -2.5 2,943,219 - BWI76_RS14080 0.52 +1.8 2,943,229 - BWI76_RS14080 0.52 -1.6 2,943,444 + BWI76_RS14080 0.59 +1.0 2,943,529 + BWI76_RS14080 0.62 -0.1 2,944,011 - BWI76_RS14080 0.77 -2.8 2,944,162 - BWI76_RS14080 0.82 -1.1 2,944,337 + BWI76_RS14080 0.88 +1.8 2,944,510 + -2.8 2,944,734 + +1.0 2,945,332 + +0.3 2,945,407 - BWI76_RS14090 0.26 -3.7 2,945,451 - BWI76_RS14090 0.36 +0.4 2,945,573 - BWI76_RS14090 0.63 +1.4
Or see this region's nucleotide sequence