Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17315 and BWI76_RS17320 overlap by 4 nucleotides BWI76_RS17320 and BWI76_RS17325 overlap by 1 nucleotides BWI76_RS17325 and BWI76_RS17330 overlap by 4 nucleotides
BWI76_RS17315: BWI76_RS17315 - EamA family transporter, at 3,584,500 to 3,585,395
_RS17315
BWI76_RS17320: BWI76_RS17320 - respiratory nitrate reductase subunit gamma, at 3,585,392 to 3,586,069
_RS17320
BWI76_RS17325: BWI76_RS17325 - nitrate reductase molybdenum cofactor assembly chaperone, at 3,586,069 to 3,586,779
_RS17325
BWI76_RS17330: BWI76_RS17330 - nitrate reductase subunit beta, at 3,586,776 to 3,588,311
_RS17330
Position (kb)
3586
3587 Strain fitness (log2 ratio)
-1
0
1
2 at 3585.328 kb on + strand at 3585.634 kb on + strand, within BWI76_RS17320 at 3585.852 kb on + strand, within BWI76_RS17320 at 3585.976 kb on - strand, within BWI76_RS17320 at 3586.413 kb on + strand, within BWI76_RS17325 at 3586.423 kb on + strand, within BWI76_RS17325 at 3586.513 kb on - strand, within BWI76_RS17325 at 3586.573 kb on + strand, within BWI76_RS17325 at 3586.661 kb on - strand, within BWI76_RS17325 at 3587.002 kb on + strand, within BWI76_RS17330 at 3587.251 kb on + strand, within BWI76_RS17330 at 3587.444 kb on - strand, within BWI76_RS17330 at 3587.501 kb on + strand, within BWI76_RS17330
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,585,328 + +0.3 3,585,634 + BWI76_RS17320 0.36 -0.5 3,585,852 + BWI76_RS17320 0.68 -0.5 3,585,976 - BWI76_RS17320 0.86 +0.0 3,586,413 + BWI76_RS17325 0.48 -0.3 3,586,423 + BWI76_RS17325 0.50 +1.9 3,586,513 - BWI76_RS17325 0.62 +0.6 3,586,573 + BWI76_RS17325 0.71 +1.1 3,586,661 - BWI76_RS17325 0.83 +0.8 3,587,002 + BWI76_RS17330 0.15 +0.8 3,587,251 + BWI76_RS17330 0.31 +0.2 3,587,444 - BWI76_RS17330 0.43 +0.3 3,587,501 + BWI76_RS17330 0.47 -1.5
Or see this region's nucleotide sequence