Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18730 and BWI76_RS18735 are separated by 114 nucleotides BWI76_RS18735 and BWI76_RS18740 are separated by 49 nucleotides BWI76_RS18740 and BWI76_RS18745 are separated by 185 nucleotides
BWI76_RS18730: BWI76_RS18730 - LysR family transcriptional regulator, at 3,883,243 to 3,884,160
_RS18730
BWI76_RS18735: BWI76_RS18735 - tautomerase family protein, at 3,884,275 to 3,884,664
_RS18735
BWI76_RS18740: BWI76_RS18740 - HPP family protein, at 3,884,714 to 3,885,445
_RS18740
BWI76_RS18745: BWI76_RS18745 - adenosylhomocysteinase, at 3,885,631 to 3,886,740
_RS18745
Position (kb)
3884
3885 Strain fitness (log2 ratio)
-1
0
1 at 3883.320 kb on + strand at 3883.438 kb on + strand, within BWI76_RS18730 at 3883.502 kb on - strand, within BWI76_RS18730 at 3883.556 kb on + strand, within BWI76_RS18730 at 3884.076 kb on - strand at 3884.224 kb on + strand at 3884.470 kb on - strand, within BWI76_RS18735 at 3884.485 kb on + strand, within BWI76_RS18735 at 3884.489 kb on + strand, within BWI76_RS18735 at 3884.492 kb on - strand, within BWI76_RS18735 at 3884.667 kb on - strand at 3884.688 kb on + strand at 3884.876 kb on - strand, within BWI76_RS18740 at 3884.876 kb on - strand, within BWI76_RS18740 at 3885.111 kb on + strand, within BWI76_RS18740 at 3885.158 kb on + strand, within BWI76_RS18740 at 3885.192 kb on + strand, within BWI76_RS18740 at 3885.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 3,883,320 + +0.9 3,883,438 + BWI76_RS18730 0.21 +0.1 3,883,502 - BWI76_RS18730 0.28 +0.4 3,883,556 + BWI76_RS18730 0.34 +0.3 3,884,076 - -0.3 3,884,224 + +1.0 3,884,470 - BWI76_RS18735 0.50 +0.2 3,884,485 + BWI76_RS18735 0.54 +1.0 3,884,489 + BWI76_RS18735 0.55 +1.2 3,884,492 - BWI76_RS18735 0.56 +0.1 3,884,667 - +0.9 3,884,688 + +0.8 3,884,876 - BWI76_RS18740 0.22 -0.1 3,884,876 - BWI76_RS18740 0.22 +0.3 3,885,111 + BWI76_RS18740 0.54 +0.2 3,885,158 + BWI76_RS18740 0.61 +0.5 3,885,192 + BWI76_RS18740 0.65 +1.2 3,885,591 - +0.7
Or see this region's nucleotide sequence