Experiment: RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11365 and BWI76_RS11370 are separated by 0 nucleotides BWI76_RS11370 and BWI76_RS11375 overlap by 4 nucleotides BWI76_RS11375 and BWI76_RS11380 overlap by 4 nucleotides BWI76_RS11380 and BWI76_RS11385 are separated by 58 nucleotides
BWI76_RS11365: BWI76_RS11365 - iron ABC transporter, at 2,395,381 to 2,396,148
_RS11365
BWI76_RS11370: BWI76_RS11370 - iron-dicitrate transporter subunit FecD, at 2,396,149 to 2,397,102
_RS11370
BWI76_RS11375: BWI76_RS11375 - iron-dicitrate transporter permease subunit, at 2,397,099 to 2,398,097
_RS11375
BWI76_RS11380: BWI76_RS11380 - iron-dicitrate transporter substrate-binding subunit, at 2,398,094 to 2,398,996
_RS11380
BWI76_RS11385: BWI76_RS11385 - TonB-dependent siderophore receptor, at 2,399,055 to 2,401,385
_RS11385
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2396.128 kb on - strand at 2396.177 kb on + strand at 2396.210 kb on + strand at 2396.870 kb on + strand, within BWI76_RS11370 at 2397.009 kb on + strand at 2397.136 kb on + strand at 2397.144 kb on - strand at 2397.183 kb on + strand at 2397.191 kb on - strand at 2397.264 kb on + strand, within BWI76_RS11375 at 2397.605 kb on - strand, within BWI76_RS11375 at 2397.760 kb on + strand, within BWI76_RS11375 at 2398.281 kb on + strand, within BWI76_RS11380 at 2398.328 kb on - strand, within BWI76_RS11380 at 2398.416 kb on - strand, within BWI76_RS11380 at 2398.872 kb on - strand, within BWI76_RS11380 at 2398.883 kb on - strand, within BWI76_RS11380 at 2398.908 kb on - strand at 2398.958 kb on - strand at 2399.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x remove 2,396,128 - +0.4 2,396,177 + +0.7 2,396,210 + -0.3 2,396,870 + BWI76_RS11370 0.76 +0.1 2,397,009 + -0.0 2,397,136 + +0.0 2,397,144 - +0.3 2,397,183 + +0.4 2,397,191 - +0.5 2,397,264 + BWI76_RS11375 0.17 +1.1 2,397,605 - BWI76_RS11375 0.51 +0.4 2,397,760 + BWI76_RS11375 0.66 +0.3 2,398,281 + BWI76_RS11380 0.21 -0.0 2,398,328 - BWI76_RS11380 0.26 +0.3 2,398,416 - BWI76_RS11380 0.36 -0.4 2,398,872 - BWI76_RS11380 0.86 +0.6 2,398,883 - BWI76_RS11380 0.87 +0.0 2,398,908 - -3.2 2,398,958 - +0.9 2,399,078 + +0.6
Or see this region's nucleotide sequence