Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05630

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
1,269,996	+		PFLU_RS05625	0.60	-1.8
1,269,997	-		PFLU_RS05625	0.61	-1.1
1,269,999	+		PFLU_RS05625	0.61	+1.7
1,270,000	-		PFLU_RS05625	0.61	-1.1
1,270,000	-		PFLU_RS05625	0.61	-3.0
1,270,050	-		PFLU_RS05625	0.63	-1.8
1,270,221	+		PFLU_RS05625	0.72	+0.9
1,270,221	+		PFLU_RS05625	0.72	-1.4
1,270,221	+		PFLU_RS05625	0.72	+0.5
1,270,222	-		PFLU_RS05625	0.72	-2.1
1,270,222	-		PFLU_RS05625	0.72	-0.1
1,270,222	-		PFLU_RS05625	0.72	-0.5
1,270,243	+		PFLU_RS05625	0.73	+0.6
1,270,258	-		PFLU_RS05625	0.74	+0.3
1,270,258	-		PFLU_RS05625	0.74	-2.0
1,270,258	-		PFLU_RS05625	0.74	-0.1
1,270,258	-		PFLU_RS05625	0.74	-1.9
1,270,296	+		PFLU_RS05625	0.76	-0.6
1,270,297	-		PFLU_RS05625	0.76	-0.5
1,270,297	-		PFLU_RS05625	0.76	-1.9
1,270,326	+		PFLU_RS05625	0.78	+0.6
1,270,326	+		PFLU_RS05625	0.78	+0.8
1,270,326	+		PFLU_RS05625	0.78	-0.1
1,270,327	-		PFLU_RS05625	0.78	+0.4
1,270,327	-		PFLU_RS05625	0.78	-2.0
1,270,327	-		PFLU_RS05625	0.78	-1.4
1,270,327	-		PFLU_RS05625	0.78	+1.1
1,270,327	-		PFLU_RS05625	0.78	+2.5
1,270,386	+		PFLU_RS05625	0.81	+1.0
1,270,386	+		PFLU_RS05625	0.81	+0.1
1,270,386	+		PFLU_RS05625	0.81	-1.1
1,270,386	+		PFLU_RS05625	0.81	+0.9
1,270,386	+		PFLU_RS05625	0.81	-0.9
1,270,386	+		PFLU_RS05625	0.81	-0.9
1,270,386	+		PFLU_RS05625	0.81	+0.6
1,270,386	+		PFLU_RS05625	0.81	-1.7
1,270,386	+		PFLU_RS05625	0.81	+0.5
1,270,386	+		PFLU_RS05625	0.81	+1.3
1,270,387	-		PFLU_RS05625	0.81	-0.1
1,270,387	-		PFLU_RS05625	0.81	-2.5
1,270,387	-		PFLU_RS05625	0.81	-2.1
1,270,387	-		PFLU_RS05625	0.81	-1.6
1,270,387	-		PFLU_RS05625	0.81	-2.5
1,270,387	-		PFLU_RS05625	0.81	-1.9
1,270,387	-		PFLU_RS05625	0.81	-1.0
1,270,387	-		PFLU_RS05625	0.81	-0.9
1,270,387	-		PFLU_RS05625	0.81	-1.6
1,270,515	+		PFLU_RS05625	0.88	+0.9
1,270,515	+		PFLU_RS05625	0.88	+0.9
1,270,515	+		PFLU_RS05625	0.88	+1.0
1,270,515	+		PFLU_RS05625	0.88	-0.1
1,270,515	+		PFLU_RS05625	0.88	+0.9
1,270,516	-		PFLU_RS05625	0.88	+0.9
1,270,516	-		PFLU_RS05625	0.88	-2.0
1,270,516	-		PFLU_RS05625	0.88	+0.7
1,270,516	-		PFLU_RS05625	0.88	+0.3
1,270,516	-		PFLU_RS05625	0.88	-0.1
1,270,516	-		PFLU_RS05625	0.88	-0.0
1,270,516	-		PFLU_RS05625	0.88	-0.4
1,270,521	+		PFLU_RS05625	0.88	+0.6
1,270,521	+		PFLU_RS05625	0.88	-0.5
1,270,521	+		PFLU_RS05625	0.88	-1.6
1,270,521	+		PFLU_RS05625	0.88	+0.9
1,270,521	+		PFLU_RS05625	0.88	+1.3
1,270,521	+		PFLU_RS05625	0.88	+1.7
1,270,522	-		PFLU_RS05625	0.88	-0.1
1,270,522	-		PFLU_RS05625	0.88	+1.6
1,270,522	-		PFLU_RS05625	0.88	+1.0
1,270,522	-		PFLU_RS05625	0.88	+1.2
1,270,522	-		PFLU_RS05625	0.88	+1.6
1,270,522	-		PFLU_RS05625	0.88	+1.8
1,270,522	-		PFLU_RS05625	0.88	-2.2
1,270,522	-		PFLU_RS05625	0.88	+1.8
1,270,522	-		PFLU_RS05625	0.88	-2.9
1,270,602	+				+0.2
1,270,602	+				+2.2
1,270,602	+				-2.6
1,270,603	-				-1.3
1,270,603	-				-0.9
1,270,603	-				-1.0
1,270,606	-				-0.4
1,270,606	-				-0.7
1,270,606	-				-2.5
1,270,606	-				-0.9
1,270,627	+				-0.3
1,270,627	+				+1.8
1,270,628	-				-1.8
1,270,628	-				-1.2
1,270,629	+				+0.6
1,270,629	+				-1.4
1,270,630	-				+2.1
1,270,630	-				-1.5
1,270,630	-				-0.4
1,270,630	-				-1.5
1,270,768	+		PFLU_RS31420	0.11	+0.2
1,270,768	+		PFLU_RS31420	0.11	+1.0
1,270,768	+		PFLU_RS31420	0.11	+0.1
1,270,768	+		PFLU_RS31420	0.11	+0.6
1,270,769	-		PFLU_RS31420	0.11	-0.9
1,270,769	-		PFLU_RS31420	0.11	-0.8
1,270,781	-		PFLU_RS31420	0.17	-2.6
1,270,781	-		PFLU_RS31420	0.17	-2.4
1,270,781	-		PFLU_RS31420	0.17	-2.5
1,270,842	+		PFLU_RS31420	0.48	+1.0
1,270,967	+				-1.2
1,270,968	-				-1.2
1,270,968	-				-2.5
1,270,968	-				-0.1
1,270,980	+				-0.7
1,270,980	+				-0.5
1,270,980	+				+0.0
1,270,980	+				-2.6
1,270,980	+				-2.6
1,270,980	+				+1.5
1,270,980	+				-0.1
1,270,981	-				-2.5
1,270,981	-				-1.5
1,270,981	-				-0.2
1,270,981	-				-1.4
1,270,981	-				-2.0
1,271,596	+		PFLU_RS05630	0.84	-0.9
1,271,597	-		PFLU_RS05630	0.84	+0.5
1,271,597	-		PFLU_RS05630	0.84	-0.4
1,271,597	-		PFLU_RS05630	0.84	-1.8
1,271,683	-				-1.0
1,271,704	+				-1.9
1,271,704	+				+3.3
1,271,705	-				-2.0
1,271,713	+				-0.4
1,271,774	+				+0.8
1,271,775	-				+0.5
1,271,775	-				-0.4
1,271,775	-				+2.5
1,271,775	-				-1.4
1,271,870	+		PFLU_RS05635	0.24	-0.1
1,271,870	+		PFLU_RS05635	0.24	+0.5
1,271,870	+		PFLU_RS05635	0.24	-0.1
1,271,870	+		PFLU_RS05635	0.24	-2.1
1,271,871	-		PFLU_RS05635	0.24	-1.1
1,271,871	-		PFLU_RS05635	0.24	-0.4
1,271,871	-		PFLU_RS05635	0.24	-0.7
1,271,975	+		PFLU_RS05635	0.39	-0.1
1,271,975	+		PFLU_RS05635	0.39	+1.6
1,271,975	+		PFLU_RS05635	0.39	+1.7
1,271,975	+		PFLU_RS05635	0.39	-1.4
1,271,975	+		PFLU_RS05635	0.39	-1.6
1,271,975	+		PFLU_RS05635	0.39	-2.0
1,271,975	+		PFLU_RS05635	0.39	-0.4
1,271,976	-		PFLU_RS05635	0.40	-1.2
1,271,976	-		PFLU_RS05635	0.40	-1.5
1,271,976	-		PFLU_RS05635	0.40	-1.4
1,271,976	-		PFLU_RS05635	0.40	-0.0
1,272,056	+		PFLU_RS05635	0.51	-1.1
1,272,056	+		PFLU_RS05635	0.51	-1.9
1,272,056	+		PFLU_RS05635	0.51	+3.7
1,272,057	-		PFLU_RS05635	0.52	+0.9
1,272,057	-		PFLU_RS05635	0.52	+0.5
1,272,140	-		PFLU_RS05635	0.64	-1.0
1,272,140	-		PFLU_RS05635	0.64	+1.6
1,272,158	+		PFLU_RS05635	0.67	-1.5
1,272,159	-		PFLU_RS05635	0.67	-1.4
1,272,159	-		PFLU_RS05635	0.67	-1.8
1,272,159	-		PFLU_RS05635	0.67	-1.5
1,272,200	+		PFLU_RS05635	0.73	+1.5
1,272,200	+		PFLU_RS05635	0.73	-0.6
1,272,200	+		PFLU_RS05635	0.73	+1.2
1,272,200	+		PFLU_RS05635	0.73	+1.1
1,272,200	+		PFLU_RS05635	0.73	+1.6
1,272,200	+		PFLU_RS05635	0.73	-2.1
1,272,200	+		PFLU_RS05635	0.73	-1.4
1,272,200	+		PFLU_RS05635	0.73	+0.1
1,272,201	-		PFLU_RS05635	0.73	+0.1
1,272,201	-		PFLU_RS05635	0.73	-0.1
1,272,201	-		PFLU_RS05635	0.73	-1.4
1,272,201	-		PFLU_RS05635	0.73	+0.3
1,272,201	-		PFLU_RS05635	0.73	-1.6
1,272,209	+		PFLU_RS05635	0.74	+3.7
1,272,209	+		PFLU_RS05635	0.74	+1.0
1,272,210	-		PFLU_RS05635	0.74	+0.2
1,272,210	-		PFLU_RS05635	0.74	-1.2
1,272,210	-		PFLU_RS05635	0.74	+1.0
1,272,210	-		PFLU_RS05635	0.74	+0.8
1,272,210	-		PFLU_RS05635	0.74	+0.8
1,272,210	-		PFLU_RS05635	0.74	-1.3
1,272,210	-		PFLU_RS05635	0.74	-0.6
1,272,210	-		PFLU_RS05635	0.74	-0.3
1,272,270	+		PFLU_RS05635	0.83	+1.6
1,272,373	+				-1.5
1,272,382	+				-0.2
1,272,382	+				-1.9
1,272,383	-				-0.5
1,272,386	+				+1.9
1,272,386	+				-3.5
1,272,387	-				-2.0
1,272,387	-				-0.4
1,272,387	-				-0.9
1,272,472	+		PFLU_RS05640	0.12	-1.5
1,272,472	+		PFLU_RS05640	0.12	+0.0
1,272,472	+		PFLU_RS05640	0.12	-2.1
1,272,472	+		PFLU_RS05640	0.12	+0.6
1,272,472	+		PFLU_RS05640	0.12	-0.5
1,272,472	+		PFLU_RS05640	0.12	-2.9
1,272,472	+		PFLU_RS05640	0.12	-0.7
1,272,472	+		PFLU_RS05640	0.12	+0.3
1,272,472	+		PFLU_RS05640	0.12	+0.7
1,272,473	-		PFLU_RS05640	0.12	-2.2
1,272,473	-		PFLU_RS05640	0.12	-1.4
1,272,473	-		PFLU_RS05640	0.12	-1.0
1,272,611	+		PFLU_RS05640	0.31	-0.6
1,272,611	+		PFLU_RS05640	0.31	+1.0
1,272,611	+		PFLU_RS05640	0.31	-0.8
1,272,612	-		PFLU_RS05640	0.31	-0.5
1,272,612	-		PFLU_RS05640	0.31	-1.2
1,272,662	-		PFLU_RS05640	0.38	-1.6