Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20220

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20215 and BPHYT_RS20220 are separated by 128 nucleotidesBPHYT_RS20220 and BPHYT_RS20225 are separated by 87 nucleotides BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477 _RS20215 BPHYT_RS20220: BPHYT_RS20220 - antibiotic synthesis protein MbtH, at 81,606 to 81,845 _RS20220 BPHYT_RS20225: BPHYT_RS20225 - taurine catabolism dioxygenase tauD/tfdA, at 81,933 to 82,967 _RS20225 Position (kb) 81 82Strain fitness (log2 ratio) -2 -1 0 1at 80.685 kb on - strandat 80.722 kb on + strandat 80.723 kb on - strandat 80.806 kb on - strandat 80.806 kb on - strandat 81.094 kb on + strand, within BPHYT_RS20215at 81.094 kb on + strand, within BPHYT_RS20215at 81.095 kb on - strand, within BPHYT_RS20215at 81.507 kb on + strandat 81.664 kb on - strand, within BPHYT_RS20220at 81.693 kb on + strand, within BPHYT_RS20220at 81.933 kb on - strandat 82.029 kb on + strandat 82.097 kb on - strand, within BPHYT_RS20225at 82.176 kb on + strand, within BPHYT_RS20225at 82.221 kb on + strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.279 kb on - strand, within BPHYT_RS20225at 82.302 kb on - strand, within BPHYT_RS20225at 82.645 kb on + strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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80,685 - +0.7
80,722 + +0.4
80,723 - +0.2
80,806 - +0.6
80,806 - -0.9
81,094 + BPHYT_RS20215 0.43 -1.2
81,094 + BPHYT_RS20215 0.43 +0.6
81,095 - BPHYT_RS20215 0.43 +0.2
81,507 + -2.4
81,664 - BPHYT_RS20220 0.24 -1.2
81,693 + BPHYT_RS20220 0.36 -2.4
81,933 - +0.0
82,029 + +1.5
82,097 - BPHYT_RS20225 0.16 -0.2
82,176 + BPHYT_RS20225 0.23 -1.0
82,221 + BPHYT_RS20225 0.28 -0.7
82,222 - BPHYT_RS20225 0.28 +0.5
82,222 - BPHYT_RS20225 0.28 -2.3
82,279 - BPHYT_RS20225 0.33 -1.5
82,302 - BPHYT_RS20225 0.36 -1.6
82,645 + BPHYT_RS20225 0.69 -0.0
82,729 - BPHYT_RS20225 0.77 -0.3
82,729 - BPHYT_RS20225 0.77 -2.3

Or see this region's nucleotide sequence