Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04050

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04045 and BPHYT_RS04050 are separated by 117 nucleotidesBPHYT_RS04050 and BPHYT_RS04055 are separated by 330 nucleotides BPHYT_RS04045: BPHYT_RS04045 - acyltransferase, at 922,428 to 923,582 _RS04045 BPHYT_RS04050: BPHYT_RS04050 - group 1 glycosyl transferase, at 923,700 to 924,905 _RS04050 BPHYT_RS04055: BPHYT_RS04055 - PST family polysaccharide export protein, at 925,236 to 926,489 _RS04055 Position (kb) 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2at 922.729 kb on - strand, within BPHYT_RS04045at 922.732 kb on - strand, within BPHYT_RS04045at 922.816 kb on - strand, within BPHYT_RS04045at 923.073 kb on + strand, within BPHYT_RS04045at 923.457 kb on + strand, within BPHYT_RS04045at 923.744 kb on + strandat 923.744 kb on + strandat 923.979 kb on - strand, within BPHYT_RS04050at 923.979 kb on - strand, within BPHYT_RS04050at 924.179 kb on - strand, within BPHYT_RS04050at 924.179 kb on - strand, within BPHYT_RS04050at 924.550 kb on + strand, within BPHYT_RS04050at 924.877 kb on + strandat 924.878 kb on - strandat 924.878 kb on - strandat 924.920 kb on + strandat 924.986 kb on + strandat 924.991 kb on - strandat 925.148 kb on + strandat 925.149 kb on - strandat 925.659 kb on + strand, within BPHYT_RS04055at 925.660 kb on - strand, within BPHYT_RS04055at 925.663 kb on - strand, within BPHYT_RS04055at 925.755 kb on + strand, within BPHYT_RS04055

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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922,729 - BPHYT_RS04045 0.26 +1.1
922,732 - BPHYT_RS04045 0.26 -1.0
922,816 - BPHYT_RS04045 0.34 -0.1
923,073 + BPHYT_RS04045 0.56 +0.2
923,457 + BPHYT_RS04045 0.89 +0.6
923,744 + -0.2
923,744 + -0.5
923,979 - BPHYT_RS04050 0.23 +0.2
923,979 - BPHYT_RS04050 0.23 +0.8
924,179 - BPHYT_RS04050 0.40 +0.2
924,179 - BPHYT_RS04050 0.40 +0.5
924,550 + BPHYT_RS04050 0.70 +0.8
924,877 + +0.0
924,878 - +0.0
924,878 - +0.9
924,920 + -0.1
924,986 + +1.9
924,991 - -1.6
925,148 + +0.7
925,149 - -2.0
925,659 + BPHYT_RS04055 0.34 +0.9
925,660 - BPHYT_RS04055 0.34 +0.7
925,663 - BPHYT_RS04055 0.34 +2.1
925,755 + BPHYT_RS04055 0.41 -0.2

Or see this region's nucleotide sequence