Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21215 and BWI76_RS21220 are separated by 73 nucleotides BWI76_RS21220 and BWI76_RS21225 are separated by 55 nucleotides BWI76_RS21225 and BWI76_RS21230 overlap by 14 nucleotides BWI76_RS21230 and BWI76_RS21235 overlap by 15 nucleotides BWI76_RS21235 and BWI76_RS21240 overlap by 56 nucleotides
BWI76_RS21215: BWI76_RS21215 - NAGC-like transcriptional regulator, at 4,443,874 to 4,445,070
_RS21215
BWI76_RS21220: BWI76_RS21220 - membrane protein, at 4,445,144 to 4,445,566
_RS21220
BWI76_RS21225: BWI76_RS21225 - serine hydroxymethyltransferase, at 4,445,622 to 4,446,875
_RS21225
BWI76_RS21230: BWI76_RS21230 - hypothetical protein, at 4,446,862 to 4,447,091
_RS21230
BWI76_RS21235: BWI76_RS21235 - hypothetical protein, at 4,447,077 to 4,447,256
_RS21235
BWI76_RS21240: BWI76_RS21240 - flavohemoprotein, at 4,447,201 to 4,448,391
_RS21240
Position (kb) 4445
4446
4447 Strain fitness (log2 ratio) -1
0
1
2
3 at 4444.755 kb on + strand, within BWI76_RS21215 at 4444.887 kb on - strand, within BWI76_RS21215 at 4444.934 kb on + strand, within BWI76_RS21215 at 4445.027 kb on - strand at 4445.165 kb on + strand at 4445.168 kb on - strand at 4445.270 kb on + strand, within BWI76_RS21220 at 4445.283 kb on - strand, within BWI76_RS21220 at 4445.423 kb on + strand, within BWI76_RS21220 at 4445.519 kb on - strand, within BWI76_RS21220 at 4445.573 kb on - strand at 4446.973 kb on - strand, within BWI76_RS21230 at 4447.198 kb on + strand, within BWI76_RS21235 at 4447.259 kb on - strand at 4447.357 kb on - strand, within BWI76_RS21240 at 4447.482 kb on + strand, within BWI76_RS21240 at 4447.482 kb on + strand, within BWI76_RS21240 at 4447.584 kb on - strand, within BWI76_RS21240 at 4447.854 kb on - strand, within BWI76_RS21240
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 4,444,755 + BWI76_RS21215 0.74 -0.4 4,444,887 - BWI76_RS21215 0.85 +0.5 4,444,934 + BWI76_RS21215 0.89 -0.5 4,445,027 - -0.4 4,445,165 + +2.8 4,445,168 - -1.3 4,445,270 + BWI76_RS21220 0.30 +0.0 4,445,283 - BWI76_RS21220 0.33 -0.1 4,445,423 + BWI76_RS21220 0.66 +1.1 4,445,519 - BWI76_RS21220 0.89 +1.2 4,445,573 - +0.0 4,446,973 - BWI76_RS21230 0.48 -0.1 4,447,198 + BWI76_RS21235 0.67 -0.1 4,447,259 - -1.3 4,447,357 - BWI76_RS21240 0.13 +1.7 4,447,482 + BWI76_RS21240 0.24 +0.3 4,447,482 + BWI76_RS21240 0.24 -0.7 4,447,584 - BWI76_RS21240 0.32 +0.0 4,447,854 - BWI76_RS21240 0.55 +1.8
Or see this region's nucleotide sequence