Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05000

Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04990 and BWI76_RS04995 are separated by 11 nucleotidesBWI76_RS04995 and BWI76_RS05000 are separated by 118 nucleotidesBWI76_RS05000 and BWI76_RS05005 overlap by 4 nucleotides BWI76_RS04990: BWI76_RS04990 - pantoate--beta-alanine ligase, at 1,046,983 to 1,047,837 _RS04990 BWI76_RS04995: BWI76_RS04995 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,047,849 to 1,048,640 _RS04995 BWI76_RS05000: BWI76_RS05000 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,048,759 to 1,049,238 _RS05000 BWI76_RS05005: BWI76_RS05005 - polynucleotide adenylyltransferase, at 1,049,235 to 1,050,632 _RS05005 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -1 0 1 2at 1048.361 kb on - strand, within BWI76_RS04995at 1048.377 kb on - strand, within BWI76_RS04995at 1048.451 kb on + strand, within BWI76_RS04995at 1048.477 kb on - strand, within BWI76_RS04995at 1048.482 kb on + strand, within BWI76_RS04995at 1049.808 kb on - strand, within BWI76_RS05005

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
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1,048,361 - BWI76_RS04995 0.65 +0.8
1,048,377 - BWI76_RS04995 0.67 +1.8
1,048,451 + BWI76_RS04995 0.76 +0.8
1,048,477 - BWI76_RS04995 0.79 +1.5
1,048,482 + BWI76_RS04995 0.80 +0.0
1,049,808 - BWI76_RS05005 0.41 -1.1

Or see this region's nucleotide sequence