Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00815 and BWI76_RS00820 are separated by 56 nucleotides BWI76_RS00820 and BWI76_RS00825 are separated by 205 nucleotides
BWI76_RS00815: BWI76_RS00815 - glycerol dehydrogenase, at 166,891 to 167,994
_RS00815
BWI76_RS00820: BWI76_RS00820 - fructose-6-phosphate aldolase, at 168,051 to 168,713
_RS00820
BWI76_RS00825: BWI76_RS00825 - AraC family transcriptional regulator, at 168,919 to 169,782
_RS00825
Position (kb) 168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 167.100 kb on + strand, within BWI76_RS00815 at 167.207 kb on + strand, within BWI76_RS00815 at 167.221 kb on + strand, within BWI76_RS00815 at 167.285 kb on - strand, within BWI76_RS00815 at 167.510 kb on + strand, within BWI76_RS00815 at 167.640 kb on + strand, within BWI76_RS00815 at 167.735 kb on + strand, within BWI76_RS00815 at 167.743 kb on - strand, within BWI76_RS00815 at 167.896 kb on - strand at 168.079 kb on + strand at 168.079 kb on + strand at 168.096 kb on + strand at 168.189 kb on + strand, within BWI76_RS00820 at 168.297 kb on + strand, within BWI76_RS00820 at 168.305 kb on - strand, within BWI76_RS00820 at 168.384 kb on - strand, within BWI76_RS00820 at 168.395 kb on + strand, within BWI76_RS00820 at 168.481 kb on + strand, within BWI76_RS00820 at 168.590 kb on - strand, within BWI76_RS00820 at 168.742 kb on + strand at 168.848 kb on + strand at 168.978 kb on - strand at 169.099 kb on - strand, within BWI76_RS00825 at 169.128 kb on + strand, within BWI76_RS00825 at 169.137 kb on + strand, within BWI76_RS00825 at 169.285 kb on + strand, within BWI76_RS00825 at 169.293 kb on - strand, within BWI76_RS00825 at 169.346 kb on - strand, within BWI76_RS00825 at 169.495 kb on - strand, within BWI76_RS00825 at 169.509 kb on + strand, within BWI76_RS00825 at 169.529 kb on - strand, within BWI76_RS00825 at 169.610 kb on + strand, within BWI76_RS00825 at 169.625 kb on + strand, within BWI76_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x remove 167,100 + BWI76_RS00815 0.19 +2.2 167,207 + BWI76_RS00815 0.29 +1.4 167,221 + BWI76_RS00815 0.30 +0.3 167,285 - BWI76_RS00815 0.36 +0.3 167,510 + BWI76_RS00815 0.56 +1.1 167,640 + BWI76_RS00815 0.68 -3.7 167,735 + BWI76_RS00815 0.76 +0.4 167,743 - BWI76_RS00815 0.77 +0.3 167,896 - -0.4 168,079 + +0.4 168,079 + +1.0 168,096 + -0.8 168,189 + BWI76_RS00820 0.21 +0.4 168,297 + BWI76_RS00820 0.37 -0.1 168,305 - BWI76_RS00820 0.38 +0.5 168,384 - BWI76_RS00820 0.50 +2.5 168,395 + BWI76_RS00820 0.52 +1.0 168,481 + BWI76_RS00820 0.65 -1.1 168,590 - BWI76_RS00820 0.81 +0.9 168,742 + +0.8 168,848 + -2.0 168,978 - -1.4 169,099 - BWI76_RS00825 0.21 +0.9 169,128 + BWI76_RS00825 0.24 +0.0 169,137 + BWI76_RS00825 0.25 +0.8 169,285 + BWI76_RS00825 0.42 +0.7 169,293 - BWI76_RS00825 0.43 +1.2 169,346 - BWI76_RS00825 0.49 +0.7 169,495 - BWI76_RS00825 0.67 -1.9 169,509 + BWI76_RS00825 0.68 +1.0 169,529 - BWI76_RS00825 0.71 +2.6 169,610 + BWI76_RS00825 0.80 +0.2 169,625 + BWI76_RS00825 0.82 +2.6
Or see this region's nucleotide sequence