Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10985

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10980 and BPHYT_RS10985 are separated by 38 nucleotidesBPHYT_RS10985 and BPHYT_RS10990 are separated by 81 nucleotides BPHYT_RS10980: BPHYT_RS10980 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 2,495,680 to 2,496,927 _RS10980 BPHYT_RS10985: BPHYT_RS10985 - MFS transporter, at 2,496,966 to 2,498,264 _RS10985 BPHYT_RS10990: BPHYT_RS10990 - gluconate 5-dehydrogenase, at 2,498,346 to 2,499,113 _RS10990 Position (kb) 2496 2497 2498 2499Strain fitness (log2 ratio) -2 -1 0 1at 2496.378 kb on - strand, within BPHYT_RS10980at 2497.563 kb on + strand, within BPHYT_RS10985at 2497.592 kb on - strand, within BPHYT_RS10985at 2497.885 kb on + strand, within BPHYT_RS10985at 2497.885 kb on + strand, within BPHYT_RS10985at 2498.186 kb on - strandat 2498.224 kb on + strandat 2498.348 kb on - strandat 2498.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,496,378 - BPHYT_RS10980 0.56 -0.2
2,497,563 + BPHYT_RS10985 0.46 +0.1
2,497,592 - BPHYT_RS10985 0.48 -0.5
2,497,885 + BPHYT_RS10985 0.71 -1.1
2,497,885 + BPHYT_RS10985 0.71 -2.1
2,498,186 - +1.3
2,498,224 + +0.1
2,498,348 - +1.3
2,498,399 - -1.8

Or see this region's nucleotide sequence