Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05255

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,002,113	+		MMP_RS05245	0.65	-1.8
1,002,113	+		MMP_RS05245	0.65	-2.5
1,002,115	+		MMP_RS05245	0.65	-4.8
1,002,115	+		MMP_RS05245	0.65	-3.8
1,002,172	+		MMP_RS05245	0.70	-1.7
1,002,316	-		MMP_RS05245	0.84	-3.5
1,002,357	-		MMP_RS05245	0.87	-1.3
1,002,357	-		MMP_RS05245	0.87	-2.3
1,002,434	-				-1.5
1,002,435	+				-1.3
1,002,435	+				-1.3
1,002,503	+				-0.8
1,002,548	-				-2.2
1,002,550	-				+0.6
1,002,551	+				+1.3
1,002,576	+				+1.7
1,002,607	-				-1.1
1,002,612	-				-0.2
1,002,638	+		MMP_RS05250	0.10	-0.8
1,002,663	-		MMP_RS05250	0.18	-0.3
1,002,859	-		MMP_RS05250	0.84	+0.1
1,002,860	+		MMP_RS05250	0.84	+0.7
1,002,903	+				-1.9
1,002,903	+				-1.4
1,002,948	-				+1.4
1,002,949	+				+1.3
1,002,949	+				-0.5
1,002,954	+				-0.5
1,002,968	+				+1.2
1,002,995	-				+0.3
1,002,996	+				+0.2
1,003,126	-				+0.7
1,003,136	+				+0.9
1,003,197	+				+1.0
1,003,226	+				-4.9
1,003,246	-		MMP_RS05255	0.11	+1.9
1,003,246	-		MMP_RS05255	0.11	+0.0
1,003,246	-		MMP_RS05255	0.11	+1.1
1,003,246	-		MMP_RS05255	0.11	-0.2
1,003,246	-		MMP_RS05255	0.11	-0.6
1,003,247	+		MMP_RS05255	0.11	+0.4
1,003,247	+		MMP_RS05255	0.11	+0.5
1,003,247	+		MMP_RS05255	0.11	-1.3
1,003,247	+		MMP_RS05255	0.11	+1.2
1,003,247	+		MMP_RS05255	0.11	-1.7
1,003,247	+		MMP_RS05255	0.11	-1.2
1,003,248	-		MMP_RS05255	0.11	+0.4
1,003,249	+		MMP_RS05255	0.11	-0.7
1,003,249	+		MMP_RS05255	0.11	+0.9
1,003,249	+		MMP_RS05255	0.11	-0.6
1,003,249	+		MMP_RS05255	0.11	-1.2
1,003,249	+		MMP_RS05255	0.11	-1.5
1,003,252	-		MMP_RS05255	0.11	+2.3
1,003,253	+		MMP_RS05255	0.11	-2.2
1,003,253	+		MMP_RS05255	0.11	-1.5
1,003,440	-		MMP_RS05255	0.26	+1.2
1,003,561	-		MMP_RS05255	0.36	+0.3
1,003,574	-		MMP_RS05255	0.37	-0.1
1,003,589	+		MMP_RS05255	0.38	+0.5
1,003,643	+		MMP_RS05255	0.43	+0.4
1,003,643	+		MMP_RS05255	0.43	-1.3
1,003,646	-		MMP_RS05255	0.43	+0.3
1,003,692	+		MMP_RS05255	0.47	+1.0
1,003,739	+		MMP_RS05255	0.50	+0.1
1,003,752	+		MMP_RS05255	0.51	-1.3
1,003,752	+		MMP_RS05255	0.51	+1.2
1,004,036	-		MMP_RS05255	0.74	-0.7
1,004,070	-		MMP_RS05255	0.77	+1.8
1,004,085	-		MMP_RS05255	0.78	-2.7
1,004,110	+		MMP_RS05255	0.80	-0.4
1,004,179	-		MMP_RS05255	0.86	-1.1
1,004,353	+				-1.5
1,004,518	-				-1.3
1,004,610	+				-3.7
1,004,636	-				-1.3
1,004,666	-				-2.0
1,004,707	+				-3.2
1,004,756	-				+0.7
1,004,834	-				-1.7
1,004,834	-				-4.2
1,004,834	-				-1.3
1,004,877	+				-3.1
1,004,917	-				-3.1
1,005,018	-				-2.3
1,005,043	+				-1.1
1,005,168	-				-4.1
1,005,169	+				-1.1
1,005,261	+				-0.8