Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04605 and MMP_RS04610 are separated by 149 nucleotides MMP_RS04610 and MMP_RS04615 are separated by 121 nucleotides MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
MMP_RS04610: MMP_RS04610 - Dabb family protein, at 880,212 to 880,514
_RS04610
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
Position (kb) 880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 879.236 kb on + strand at 879.236 kb on + strand at 879.237 kb on - strand at 879.244 kb on + strand at 879.250 kb on + strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.306 kb on - strand at 879.322 kb on - strand at 879.333 kb on - strand at 879.450 kb on + strand, within MMP_RS04605 at 879.563 kb on + strand, within MMP_RS04605 at 879.577 kb on - strand, within MMP_RS04605 at 879.592 kb on + strand, within MMP_RS04605 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand at 880.144 kb on - strand at 880.156 kb on - strand at 880.159 kb on - strand at 880.173 kb on - strand at 880.193 kb on + strand at 880.193 kb on + strand at 880.210 kb on + strand at 880.214 kb on + strand at 880.305 kb on - strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.460 kb on - strand, within MMP_RS04610 at 880.515 kb on + strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.519 kb on + strand at 880.519 kb on + strand at 880.562 kb on - strand at 880.568 kb on - strand at 880.568 kb on - strand at 880.569 kb on + strand at 880.569 kb on + strand at 880.572 kb on - strand at 880.576 kb on + strand at 880.576 kb on + strand at 880.704 kb on - strand, within MMP_RS04615 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.223 kb on - strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.224 kb on + strand, within MMP_RS04620 at 881.232 kb on + strand, within MMP_RS04620 at 881.319 kb on + strand, within MMP_RS04620 at 881.331 kb on + strand, within MMP_RS04620 at 881.337 kb on + strand, within MMP_RS04620 at 881.340 kb on + strand, within MMP_RS04620 at 881.366 kb on - strand, within MMP_RS04620 at 881.415 kb on + strand, within MMP_RS04620 at 881.446 kb on - strand, within MMP_RS04620 at 881.464 kb on - strand, within MMP_RS04620
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 879,236 + +0.7 879,236 + -1.2 879,237 - +0.7 879,244 + +0.5 879,250 + +0.9 879,252 - +0.3 879,252 - +0.9 879,252 - +0.9 879,252 - +0.8 879,252 - +0.2 879,252 - +1.0 879,252 - -0.3 879,253 + +0.5 879,253 + +1.0 879,253 + +0.8 879,306 - +0.2 879,322 - +1.6 879,333 - +1.6 879,450 + MMP_RS04605 0.20 -2.4 879,563 + MMP_RS04605 0.35 +1.7 879,577 - MMP_RS04605 0.37 +2.2 879,592 + MMP_RS04605 0.39 +2.7 879,656 + MMP_RS04605 0.47 +1.5 879,993 - +1.6 880,000 - +1.8 880,087 + +0.7 880,089 - +2.1 880,089 - +0.0 880,089 - -1.0 880,090 + +1.9 880,094 - +0.2 880,110 + +2.3 880,117 + +1.4 880,117 + -0.4 880,117 + +1.2 880,117 + -0.8 880,122 - +0.1 880,128 + +1.1 880,132 - +1.1 880,132 - +0.7 880,139 - -1.5 880,140 + +0.9 880,144 - +0.9 880,156 - -0.6 880,159 - +0.2 880,173 - +1.3 880,193 + -2.5 880,193 + +0.8 880,210 + -1.8 880,214 + +0.8 880,305 - MMP_RS04610 0.31 +1.3 880,306 + MMP_RS04610 0.31 -4.2 880,306 + MMP_RS04610 0.31 +0.9 880,460 - MMP_RS04610 0.82 +0.1 880,515 + -0.2 880,518 - +0.7 880,518 - -1.5 880,518 - +0.2 880,519 + +0.1 880,519 + +0.8 880,562 - +2.2 880,568 - +0.4 880,568 - -0.3 880,569 + +1.0 880,569 + +0.0 880,572 - +1.5 880,576 + +0.9 880,576 + -0.7 880,704 - MMP_RS04615 0.21 +2.0 880,889 + MMP_RS04615 0.77 +1.8 880,912 - +1.5 880,912 - MMP_RS04615 0.84 +1.9 880,913 + MMP_RS04615 0.85 -1.3 881,024 - MMP_RS04620 0.11 -1.6 881,223 - MMP_RS04620 0.42 +1.8 881,223 - MMP_RS04620 0.42 -1.0 881,223 - MMP_RS04620 0.42 +1.3 881,224 + MMP_RS04620 0.42 -0.4 881,224 + MMP_RS04620 0.42 +0.0 881,224 + MMP_RS04620 0.42 +1.6 881,224 + MMP_RS04620 0.42 +1.4 881,224 + MMP_RS04620 0.42 +2.3 881,224 + MMP_RS04620 0.42 -0.1 881,224 + MMP_RS04620 0.42 +2.3 881,224 + MMP_RS04620 0.42 +0.2 881,224 + MMP_RS04620 0.42 +1.8 881,232 + MMP_RS04620 0.43 +2.3 881,319 + MMP_RS04620 0.57 +1.9 881,331 + MMP_RS04620 0.59 +1.1 881,337 + MMP_RS04620 0.60 +2.2 881,340 + MMP_RS04620 0.60 +1.8 881,366 - MMP_RS04620 0.64 +1.2 881,415 + MMP_RS04620 0.72 +2.6 881,446 - MMP_RS04620 0.77 +2.0 881,464 - MMP_RS04620 0.80 +1.3
Or see this region's nucleotide sequence