Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03705 and MMP_RS03710 are separated by 157 nucleotides MMP_RS03710 and MMP_RS03715 are separated by 216 nucleotides MMP_RS03715 and MMP_RS03720 are separated by 156 nucleotides
MMP_RS03705: MMP_RS03705 - (5-formylfuran-3-yl)methyl phosphate synthase, at 699,229 to 699,939
_RS03705
MMP_RS03710: MMP_RS03710 - tRNA-Arg, at 700,097 to 700,170
_RS03710
MMP_RS03715: MMP_RS03715 - class III signal peptide-containing protein, at 700,387 to 700,983
_RS03715
MMP_RS03720: MMP_RS03720 - cation-transporting P-type ATPase, at 701,140 to 703,920
_RS03720
Position (kb) 700
701 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 699.462 kb on + strand at 699.462 kb on + strand at 699.795 kb on - strand at 699.819 kb on + strand at 699.827 kb on - strand at 699.827 kb on - strand at 699.827 kb on - strand at 699.864 kb on - strand at 699.955 kb on + strand at 699.968 kb on + strand at 699.977 kb on + strand at 700.050 kb on - strand at 700.051 kb on + strand at 700.051 kb on + strand at 700.177 kb on - strand at 700.290 kb on - strand at 700.290 kb on - strand at 700.298 kb on + strand at 700.298 kb on + strand at 700.307 kb on + strand at 700.310 kb on + strand at 700.317 kb on + strand at 700.351 kb on - strand at 700.354 kb on + strand at 700.358 kb on - strand at 700.358 kb on - strand at 700.359 kb on + strand at 700.359 kb on + strand at 700.362 kb on - strand at 700.362 kb on - strand at 700.363 kb on + strand at 700.363 kb on + strand at 700.364 kb on - strand at 700.364 kb on - strand at 700.364 kb on - strand at 700.364 kb on - strand at 700.364 kb on - strand at 700.365 kb on + strand at 700.365 kb on + strand at 700.365 kb on + strand at 700.428 kb on + strand at 700.456 kb on - strand, within MMP_RS03715 at 700.648 kb on - strand, within MMP_RS03715 at 700.648 kb on - strand, within MMP_RS03715 at 700.648 kb on - strand, within MMP_RS03715 at 700.649 kb on + strand, within MMP_RS03715 at 700.649 kb on + strand, within MMP_RS03715 at 700.649 kb on + strand, within MMP_RS03715 at 700.649 kb on + strand, within MMP_RS03715 at 700.653 kb on - strand, within MMP_RS03715 at 700.654 kb on + strand, within MMP_RS03715 at 700.654 kb on + strand, within MMP_RS03715 at 700.656 kb on - strand, within MMP_RS03715 at 700.674 kb on + strand, within MMP_RS03715 at 700.698 kb on + strand, within MMP_RS03715 at 700.698 kb on + strand, within MMP_RS03715 at 700.698 kb on + strand, within MMP_RS03715 at 700.811 kb on + strand, within MMP_RS03715 at 700.838 kb on - strand, within MMP_RS03715 at 700.934 kb on + strand at 700.938 kb on + strand at 700.938 kb on + strand at 700.944 kb on + strand at 701.022 kb on + strand at 701.022 kb on + strand at 701.056 kb on + strand at 701.060 kb on - strand at 701.064 kb on - strand at 701.073 kb on - strand at 701.337 kb on + strand at 701.480 kb on - strand, within MMP_RS03720 at 701.553 kb on - strand, within MMP_RS03720 at 701.553 kb on - strand, within MMP_RS03720 at 701.554 kb on + strand, within MMP_RS03720 at 701.612 kb on + strand, within MMP_RS03720 at 701.618 kb on - strand, within MMP_RS03720 at 701.891 kb on - strand, within MMP_RS03720 at 701.896 kb on + strand, within MMP_RS03720 at 701.906 kb on - strand, within MMP_RS03720 at 701.906 kb on - strand, within MMP_RS03720 at 701.918 kb on - strand, within MMP_RS03720
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 699,462 + -4.1 699,462 + +1.9 699,795 - -2.2 699,819 + -5.2 699,827 - -3.6 699,827 - -2.6 699,827 - -3.9 699,864 - -4.4 699,955 + +0.1 699,968 + +0.5 699,977 + -4.7 700,050 - -4.2 700,051 + -3.8 700,051 + -3.2 700,177 - +0.5 700,290 - +1.2 700,290 - -0.2 700,298 + -1.2 700,298 + -0.6 700,307 + +0.1 700,310 + -1.9 700,317 + -2.8 700,351 - +2.1 700,354 + -2.3 700,358 - -3.9 700,358 - +0.4 700,359 + +0.0 700,359 + +0.2 700,362 - -0.5 700,362 - -1.2 700,363 + +0.4 700,363 + +0.8 700,364 - +0.0 700,364 - +0.4 700,364 - +1.1 700,364 - +0.8 700,364 - +2.5 700,365 + +0.9 700,365 + +0.1 700,365 + +0.2 700,428 + -1.0 700,456 - MMP_RS03715 0.12 -1.8 700,648 - MMP_RS03715 0.44 -0.2 700,648 - MMP_RS03715 0.44 +0.4 700,648 - MMP_RS03715 0.44 +0.6 700,649 + MMP_RS03715 0.44 +0.7 700,649 + MMP_RS03715 0.44 +0.9 700,649 + MMP_RS03715 0.44 -0.4 700,649 + MMP_RS03715 0.44 +0.3 700,653 - MMP_RS03715 0.45 -0.4 700,654 + MMP_RS03715 0.45 +0.5 700,654 + MMP_RS03715 0.45 -1.6 700,656 - MMP_RS03715 0.45 -0.7 700,674 + MMP_RS03715 0.48 +1.4 700,698 + MMP_RS03715 0.52 +0.1 700,698 + MMP_RS03715 0.52 +1.3 700,698 + MMP_RS03715 0.52 +0.8 700,811 + MMP_RS03715 0.71 -0.7 700,838 - MMP_RS03715 0.76 +1.6 700,934 + +1.0 700,938 + +0.1 700,938 + +0.4 700,944 + -0.1 701,022 + -1.5 701,022 + +0.5 701,056 + +0.4 701,060 - +0.1 701,064 - +0.1 701,073 - +0.1 701,337 + -2.3 701,480 - MMP_RS03720 0.12 -0.2 701,553 - MMP_RS03720 0.15 -1.2 701,553 - MMP_RS03720 0.15 -0.2 701,554 + MMP_RS03720 0.15 -1.6 701,612 + MMP_RS03720 0.17 -0.0 701,618 - MMP_RS03720 0.17 +0.7 701,891 - MMP_RS03720 0.27 +0.5 701,896 + MMP_RS03720 0.27 +1.4 701,906 - MMP_RS03720 0.28 +0.6 701,906 - MMP_RS03720 0.28 -0.7 701,918 - MMP_RS03720 0.28 -0.2
Or see this region's nucleotide sequence