Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04665 and MMP_RS04670 are separated by 301 nucleotides MMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides MMP_RS04675 and MMP_RS04680 are separated by 29 nucleotides
MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625
_RS04665
MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586
_RS04670
MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249
_RS04675
MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316
_RS04680
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 893.965 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 893.992 kb on + strand, within MMP_RS04665 at 894.025 kb on - strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.026 kb on + strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.030 kb on - strand, within MMP_RS04665 at 894.031 kb on + strand, within MMP_RS04665 at 894.048 kb on - strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.049 kb on + strand, within MMP_RS04665 at 894.061 kb on - strand, within MMP_RS04665 at 894.068 kb on - strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.069 kb on + strand, within MMP_RS04665 at 894.104 kb on + strand, within MMP_RS04665 at 894.130 kb on - strand, within MMP_RS04665 at 894.147 kb on - strand, within MMP_RS04665 at 894.152 kb on - strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.179 kb on + strand, within MMP_RS04665 at 894.193 kb on - strand, within MMP_RS04665 at 894.194 kb on + strand, within MMP_RS04665 at 894.196 kb on + strand, within MMP_RS04665 at 894.207 kb on - strand, within MMP_RS04665 at 894.221 kb on - strand, within MMP_RS04665 at 894.252 kb on - strand, within MMP_RS04665 at 894.303 kb on - strand, within MMP_RS04665 at 894.345 kb on - strand at 894.346 kb on + strand at 894.445 kb on + strand at 894.445 kb on + strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.465 kb on - strand at 894.466 kb on + strand at 894.466 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.483 kb on - strand at 894.484 kb on + strand at 894.538 kb on - strand at 894.539 kb on + strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.649 kb on - strand at 894.650 kb on + strand at 894.665 kb on + strand at 894.665 kb on + strand at 894.666 kb on - strand at 894.680 kb on - strand at 894.681 kb on + strand at 894.727 kb on + strand at 894.757 kb on - strand at 894.757 kb on - strand at 894.758 kb on + strand at 894.762 kb on + strand at 894.804 kb on - strand at 894.805 kb on + strand at 894.809 kb on - strand at 894.810 kb on + strand at 894.892 kb on - strand at 894.903 kb on - strand at 894.906 kb on - strand at 894.911 kb on - strand at 894.911 kb on - strand at 894.922 kb on - strand at 894.988 kb on - strand at 895.000 kb on + strand, within MMP_RS04670 at 895.002 kb on + strand, within MMP_RS04670 at 895.006 kb on - strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.007 kb on + strand, within MMP_RS04670 at 895.060 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.067 kb on + strand, within MMP_RS04670 at 895.094 kb on - strand, within MMP_RS04670 at 895.130 kb on - strand, within MMP_RS04670 at 895.186 kb on - strand, within MMP_RS04670 at 895.232 kb on - strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.233 kb on + strand, within MMP_RS04670 at 895.235 kb on + strand, within MMP_RS04670 at 895.417 kb on + strand, within MMP_RS04670 at 895.546 kb on + strand at 895.578 kb on + strand at 895.625 kb on - strand at 895.644 kb on + strand at 895.649 kb on + strand at 895.679 kb on + strand, within MMP_RS04675 at 895.685 kb on + strand, within MMP_RS04675 at 895.757 kb on - strand, within MMP_RS04675 at 895.761 kb on + strand, within MMP_RS04675 at 895.777 kb on - strand, within MMP_RS04675 at 895.817 kb on - strand, within MMP_RS04675 at 895.827 kb on - strand, within MMP_RS04675 at 895.869 kb on + strand, within MMP_RS04675 at 895.906 kb on - strand, within MMP_RS04675 at 895.907 kb on + strand, within MMP_RS04675 at 895.909 kb on - strand, within MMP_RS04675 at 895.995 kb on - strand, within MMP_RS04675 at 896.017 kb on + strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.062 kb on - strand, within MMP_RS04675 at 896.212 kb on - strand at 896.229 kb on - strand at 896.231 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.234 kb on - strand at 896.248 kb on + strand at 896.288 kb on - strand at 896.288 kb on - strand at 896.320 kb on - strand at 896.324 kb on - strand at 896.324 kb on - strand at 896.340 kb on + strand at 896.414 kb on + strand at 896.504 kb on + strand at 896.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 893,965 + MMP_RS04665 0.79 -0.6 893,992 + MMP_RS04665 0.79 +0.8 893,992 + MMP_RS04665 0.79 +0.5 894,025 - MMP_RS04665 0.80 +0.5 894,026 + MMP_RS04665 0.81 +0.8 894,026 + MMP_RS04665 0.81 +1.5 894,030 - MMP_RS04665 0.81 -1.2 894,030 - MMP_RS04665 0.81 -0.4 894,030 - MMP_RS04665 0.81 -0.2 894,030 - MMP_RS04665 0.81 +1.9 894,031 + MMP_RS04665 0.81 +0.1 894,048 - MMP_RS04665 0.81 +0.6 894,049 + MMP_RS04665 0.81 +0.5 894,049 + MMP_RS04665 0.81 -1.0 894,061 - MMP_RS04665 0.82 +2.3 894,068 - MMP_RS04665 0.82 -2.3 894,069 + MMP_RS04665 0.82 +0.3 894,069 + MMP_RS04665 0.82 +1.5 894,104 + MMP_RS04665 0.83 +0.3 894,130 - MMP_RS04665 0.84 -1.2 894,147 - MMP_RS04665 0.84 +1.6 894,152 - MMP_RS04665 0.85 +2.2 894,179 + MMP_RS04665 0.85 +1.0 894,179 + MMP_RS04665 0.85 +0.5 894,193 - MMP_RS04665 0.86 +1.5 894,194 + MMP_RS04665 0.86 +0.8 894,196 + MMP_RS04665 0.86 +1.8 894,207 - MMP_RS04665 0.86 +0.5 894,221 - MMP_RS04665 0.87 -0.2 894,252 - MMP_RS04665 0.88 -0.1 894,303 - MMP_RS04665 0.90 -0.0 894,345 - +0.8 894,346 + +0.4 894,445 + -1.9 894,445 + -1.7 894,465 - +1.2 894,465 - +1.0 894,465 - -1.3 894,466 + -1.6 894,466 + -3.5 894,470 + +2.5 894,470 + +0.0 894,470 + +2.7 894,483 - -2.0 894,484 + +0.1 894,538 - +2.0 894,539 + +1.2 894,649 - -0.2 894,649 - +1.7 894,649 - -0.5 894,649 - -2.2 894,650 + -0.1 894,665 + -0.1 894,665 + +3.0 894,666 - +2.1 894,680 - +1.2 894,681 + +1.8 894,727 + -2.2 894,757 - -1.1 894,757 - -0.7 894,758 + -0.5 894,762 + -0.8 894,804 - +0.4 894,805 + +0.8 894,809 - -1.7 894,810 + +1.7 894,892 - +2.8 894,903 - +0.7 894,906 - +0.9 894,911 - -2.7 894,911 - +0.3 894,922 - -0.0 894,988 - -1.5 895,000 + MMP_RS04670 0.11 -0.4 895,002 + MMP_RS04670 0.11 -0.6 895,006 - MMP_RS04670 0.12 +0.0 895,007 + MMP_RS04670 0.12 -0.0 895,007 + MMP_RS04670 0.12 -2.4 895,060 + MMP_RS04670 0.20 -0.7 895,067 + MMP_RS04670 0.21 +0.1 895,067 + MMP_RS04670 0.21 -1.2 895,094 - MMP_RS04670 0.25 -0.1 895,130 - MMP_RS04670 0.31 +0.8 895,186 - MMP_RS04670 0.39 +0.4 895,232 - MMP_RS04670 0.46 -1.5 895,233 + MMP_RS04670 0.46 -0.4 895,233 + MMP_RS04670 0.46 +0.0 895,235 + MMP_RS04670 0.47 +3.4 895,417 + MMP_RS04670 0.74 +1.1 895,546 + +1.5 895,578 + +1.9 895,625 - +0.8 895,644 + -0.9 895,649 + -0.3 895,679 + MMP_RS04675 0.13 -0.5 895,685 + MMP_RS04675 0.14 +1.0 895,757 - MMP_RS04675 0.25 +0.7 895,761 + MMP_RS04675 0.25 +0.0 895,777 - MMP_RS04675 0.28 -1.4 895,817 - MMP_RS04675 0.34 +1.3 895,827 - MMP_RS04675 0.35 +2.7 895,869 + MMP_RS04675 0.42 +2.6 895,906 - MMP_RS04675 0.47 +1.4 895,907 + MMP_RS04675 0.48 -3.1 895,909 - MMP_RS04675 0.48 -1.1 895,995 - MMP_RS04675 0.61 -1.9 896,017 + MMP_RS04675 0.64 -0.4 896,062 - MMP_RS04675 0.71 -1.7 896,062 - MMP_RS04675 0.71 -1.5 896,212 - -0.1 896,229 - +0.6 896,231 - +1.2 896,234 - +0.6 896,234 - -1.0 896,234 - -0.2 896,248 + -0.7 896,288 - +0.4 896,288 - -0.6 896,320 - -1.3 896,324 - +1.2 896,324 - +1.1 896,340 + +1.1 896,414 + -2.2 896,504 + -2.4 896,575 + -2.4
Or see this region's nucleotide sequence