Experiment: McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00120 and MMP_RS00125 are separated by 29 nucleotides MMP_RS00125 and MMP_RS00130 are separated by 91 nucleotides MMP_RS00130 and MMP_RS00135 are separated by 116 nucleotides MMP_RS00135 and MMP_RS00140 are separated by 4 nucleotides MMP_RS00140 and MMP_RS00145 overlap by 4 nucleotides
MMP_RS00120: MMP_RS00120 - LysR family transcriptional regulator, at 27,798 to 28,640
_RS00120
MMP_RS00125: MMP_RS00125 - DUF2798 domain-containing protein, at 28,670 to 28,897
_RS00125
MMP_RS00130: MMP_RS00130 - nickel-responsive transcriptional regulator NikR, at 28,989 to 29,414
_RS00130
MMP_RS00135: MMP_RS00135 - DUF2121 domain-containing protein, at 29,531 to 30,406
_RS00135
MMP_RS00140: MMP_RS00140 - DUF192 domain-containing protein, at 30,411 to 30,746
_RS00140
MMP_RS00145: MMP_RS00145 - ATP-dependent Clp protease proteolytic subunit, at 30,743 to 31,567
_RS00145
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 28.609 kb on - strand at 28.657 kb on + strand at 28.659 kb on - strand at 28.660 kb on + strand at 28.683 kb on + strand at 28.829 kb on - strand, within MMP_RS00125 at 28.900 kb on + strand at 28.900 kb on + strand at 28.924 kb on - strand at 29.300 kb on - strand, within MMP_RS00130 at 29.390 kb on - strand at 29.390 kb on - strand at 29.390 kb on - strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.418 kb on + strand at 29.453 kb on + strand at 29.459 kb on - strand at 29.516 kb on + strand at 29.746 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.231 kb on - strand, within MMP_RS00135 at 30.253 kb on - strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135 at 30.479 kb on - strand, within MMP_RS00140 at 30.489 kb on - strand, within MMP_RS00140 at 30.520 kb on + strand, within MMP_RS00140 at 30.534 kb on + strand, within MMP_RS00140 at 30.571 kb on + strand, within MMP_RS00140 at 30.703 kb on + strand, within MMP_RS00140 at 30.723 kb on - strand at 30.780 kb on - strand at 30.780 kb on - strand at 30.780 kb on - strand at 30.841 kb on - strand, within MMP_RS00145 at 30.890 kb on + strand, within MMP_RS00145 at 30.926 kb on + strand, within MMP_RS00145 at 31.128 kb on + strand, within MMP_RS00145 at 31.278 kb on + strand, within MMP_RS00145 at 31.319 kb on + strand, within MMP_RS00145 at 31.319 kb on + strand, within MMP_RS00145 at 31.337 kb on + strand, within MMP_RS00145 at 31.372 kb on - strand, within MMP_RS00145 at 31.377 kb on - strand, within MMP_RS00145 at 31.378 kb on + strand, within MMP_RS00145 at 31.378 kb on + strand, within MMP_RS00145 at 31.382 kb on + strand, within MMP_RS00145
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 2-bromoethanesulfonic 4.16666666666667E-05 mM remove 28,609 - +1.7 28,657 + +1.2 28,659 - +1.3 28,660 + -1.6 28,683 + +0.8 28,829 - MMP_RS00125 0.70 +1.9 28,900 + +1.9 28,900 + +0.5 28,924 - -1.4 29,300 - MMP_RS00130 0.73 -0.2 29,390 - -2.4 29,390 - -1.1 29,390 - -1.6 29,417 - +0.1 29,417 - -1.1 29,418 + -0.4 29,453 + +1.9 29,459 - -1.0 29,516 + -1.2 29,746 + MMP_RS00135 0.25 +2.9 29,770 + MMP_RS00135 0.27 +0.9 29,770 + MMP_RS00135 0.27 +0.3 29,807 - MMP_RS00135 0.32 +0.8 29,807 - MMP_RS00135 0.32 +1.2 30,051 + MMP_RS00135 0.59 -0.2 30,051 + MMP_RS00135 0.59 -1.7 30,231 - MMP_RS00135 0.80 +0.7 30,253 - MMP_RS00135 0.82 +2.7 30,262 + MMP_RS00135 0.83 +2.2 30,262 + MMP_RS00135 0.83 +1.6 30,479 - MMP_RS00140 0.20 -0.1 30,489 - MMP_RS00140 0.23 +1.0 30,520 + MMP_RS00140 0.32 +3.8 30,534 + MMP_RS00140 0.37 -1.1 30,571 + MMP_RS00140 0.48 -1.1 30,703 + MMP_RS00140 0.87 -0.3 30,723 - -3.4 30,780 - +0.9 30,780 - -0.1 30,780 - +1.4 30,841 - MMP_RS00145 0.12 +2.1 30,890 + MMP_RS00145 0.18 +1.7 30,926 + MMP_RS00145 0.22 -1.1 31,128 + MMP_RS00145 0.47 +1.3 31,278 + MMP_RS00145 0.65 -0.6 31,319 + MMP_RS00145 0.70 -0.4 31,319 + MMP_RS00145 0.70 -1.7 31,337 + MMP_RS00145 0.72 +2.1 31,372 - MMP_RS00145 0.76 +0.9 31,377 - MMP_RS00145 0.77 -0.1 31,378 + MMP_RS00145 0.77 -2.2 31,378 + MMP_RS00145 0.77 -1.5 31,382 + MMP_RS00145 0.77 -0.6
Or see this region's nucleotide sequence