Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13360

Experiment: R2A_PIPES with Cobalt chloride 256 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cobalt chloride 256 uM
2,994,550	+		LRK54_RS13345	0.84	+0.6
2,994,633	+				-1.1
2,994,633	+				-1.9
2,994,633	+				-0.8
2,994,633	+				-0.3
2,994,633	+				-0.9
2,994,633	+				-3.2
2,994,633	+				-1.6
2,994,633	+				+0.4
2,994,633	+				-1.5
2,994,633	+				-0.7
2,994,633	+				-0.2
2,994,633	+				-0.2
2,994,633	+				-1.1
2,994,633	+				+1.8
2,994,633	+				-1.5
2,994,633	+				+1.0
2,994,633	+				-0.0
2,994,633	+				-0.2
2,994,633	+				+0.5
2,994,633	+				-1.4
2,994,633	+				-1.0
2,994,633	+				-1.0
2,994,633	+				+0.2
2,994,633	+				-1.3
2,994,633	+				-0.9
2,994,633	+				-1.9
2,994,633	+				+0.6
2,994,633	+				+0.1
2,994,633	+				-0.4
2,994,633	+				-2.0
2,994,633	+				-0.9
2,994,633	+				-1.3
2,994,633	+				-1.0
2,994,633	+				-0.2
2,994,633	+				-0.5
2,994,633	+				-0.7
2,994,633	+				-0.5
2,994,633	+				-1.8
2,994,633	+				-1.1
2,994,633	+				-0.2
2,994,633	+				+0.2
2,994,633	+				-0.8
2,994,634	-				-1.3
2,994,634	-				-0.6
2,994,634	-				-1.5
2,994,634	-				-0.7
2,994,634	-				-0.8
2,994,634	-				+0.9
2,994,634	-				-1.2
2,994,634	-				-0.8
2,994,634	-				+0.2
2,994,634	-				-0.9
2,994,634	-				-0.9
2,994,634	-				-1.3
2,994,634	-				-2.8
2,994,634	-				-0.4
2,994,634	-				+0.0
2,994,634	-				-1.2
2,994,634	-				-1.4
2,994,634	-				-1.1
2,994,634	-				-1.2
2,994,634	-				-2.5
2,994,634	-				-1.5
2,994,634	-				-3.0
2,994,634	-				-1.3
2,994,634	-				-1.0
2,994,634	-				-1.2
2,994,634	-				-1.2
2,994,634	-				-1.0
2,994,634	-				+0.8
2,994,634	-				+0.3
2,994,634	-				-1.9
2,994,634	-				-1.1
2,994,634	-				-1.4
2,994,634	-				-0.1
2,994,634	-				-1.8
2,994,634	-				+0.0
2,994,784	+		LRK54_RS13350	0.31	+0.2
2,994,784	+		LRK54_RS13350	0.31	-0.3
2,994,784	+		LRK54_RS13350	0.31	-1.8
2,994,784	+		LRK54_RS13350	0.31	-0.1
2,994,785	-		LRK54_RS13350	0.31	+1.0
2,994,785	-		LRK54_RS13350	0.31	-0.4
2,994,785	-		LRK54_RS13350	0.31	+1.6
2,994,785	-		LRK54_RS13350	0.31	+0.8
2,994,785	-		LRK54_RS13350	0.31	-0.4
2,994,785	-		LRK54_RS13350	0.31	-1.0
2,994,785	-		LRK54_RS13350	0.31	-2.0
2,994,844	+		LRK54_RS13350	0.43	-0.0
2,994,844	+		LRK54_RS13350	0.43	+0.4
2,994,844	+		LRK54_RS13350	0.43	-1.2
2,994,844	+		LRK54_RS13350	0.43	-0.3
2,994,845	-		LRK54_RS13350	0.43	-2.5
2,994,845	-		LRK54_RS13350	0.43	-0.5
2,994,845	-		LRK54_RS13350	0.43	-0.5
2,994,845	-		LRK54_RS13350	0.43	-0.2
2,994,845	-		LRK54_RS13350	0.43	+0.2
2,995,316	+		LRK54_RS13355	0.34	-0.4
2,995,316	+		LRK54_RS13355	0.34	+0.0
2,995,316	+		LRK54_RS13355	0.34	-1.2
2,995,316	+		LRK54_RS13355	0.34	+0.5
2,995,316	+		LRK54_RS13355	0.34	+0.0
2,995,316	+		LRK54_RS13355	0.34	-0.5
2,995,316	+		LRK54_RS13355	0.34	-1.2
2,995,317	-		LRK54_RS13355	0.35	+0.2
2,995,317	-		LRK54_RS13355	0.35	-3.3
2,995,317	-		LRK54_RS13355	0.35	-1.7
2,995,317	-		LRK54_RS13355	0.35	-0.5
2,995,317	-		LRK54_RS13355	0.35	-0.2
2,995,317	-		LRK54_RS13355	0.35	-1.8
2,995,317	-		LRK54_RS13355	0.35	-1.4
2,995,317	-		LRK54_RS13355	0.35	-0.5
2,995,317	-		LRK54_RS13355	0.35	+0.2
2,995,317	-		LRK54_RS13355	0.35	-1.3
2,995,317	-		LRK54_RS13355	0.35	-0.9
2,995,317	-		LRK54_RS13355	0.35	-2.1
2,995,317	-		LRK54_RS13355	0.35	-1.7
2,995,317	-		LRK54_RS13355	0.35	+0.2
2,995,317	-		LRK54_RS13355	0.35	+1.5
2,995,317	-		LRK54_RS13355	0.35	-0.8
2,995,317	-		LRK54_RS13355	0.35	-2.0
2,995,451	+		LRK54_RS13355	0.86	+0.5
2,995,451	+		LRK54_RS13355	0.86	-0.2
2,995,451	+		LRK54_RS13355	0.86	+0.6
2,995,451	+		LRK54_RS13355	0.86	+0.7
2,995,451	+		LRK54_RS13355	0.86	+0.6
2,995,451	+		LRK54_RS13355	0.86	+0.0
2,995,452	-		LRK54_RS13355	0.87	-1.4
2,995,452	-		LRK54_RS13355	0.87	-1.9
2,995,452	-		LRK54_RS13355	0.87	-1.2
2,995,452	-		LRK54_RS13355	0.87	+1.8
2,995,852	+		LRK54_RS13360	0.21	-1.8
2,995,852	+		LRK54_RS13360	0.21	-0.5
2,995,852	+		LRK54_RS13360	0.21	-0.7
2,995,852	+		LRK54_RS13360	0.21	-0.8
2,995,852	+		LRK54_RS13360	0.21	-2.5
2,995,852	+		LRK54_RS13360	0.21	+1.8
2,995,852	+		LRK54_RS13360	0.21	-2.6
2,995,852	+		LRK54_RS13360	0.21	-1.8
2,995,852	+		LRK54_RS13360	0.21	-1.2
2,995,852	+		LRK54_RS13360	0.21	+0.4
2,995,852	+		LRK54_RS13360	0.21	-0.5
2,995,852	+		LRK54_RS13360	0.21	-0.9
2,995,852	+		LRK54_RS13360	0.21	-2.5
2,995,852	+		LRK54_RS13360	0.21	+0.2
2,995,852	+		LRK54_RS13360	0.21	-0.2
2,995,852	+		LRK54_RS13360	0.21	-1.0
2,995,852	+		LRK54_RS13360	0.21	-3.9
2,995,852	+		LRK54_RS13360	0.21	+0.4
2,995,852	+		LRK54_RS13360	0.21	-1.1
2,995,853	-		LRK54_RS13360	0.21	-1.4
2,995,853	-		LRK54_RS13360	0.21	+0.4
2,995,853	-		LRK54_RS13360	0.21	-1.6
2,995,853	-		LRK54_RS13360	0.21	-2.8
2,995,853	-		LRK54_RS13360	0.21	-1.2
2,995,853	-		LRK54_RS13360	0.21	-1.4
2,995,853	-		LRK54_RS13360	0.21	-2.6
2,995,853	-		LRK54_RS13360	0.21	+0.3
2,995,853	-		LRK54_RS13360	0.21	-0.8
2,995,853	-		LRK54_RS13360	0.21	-0.7
2,995,853	-		LRK54_RS13360	0.21	-0.7
2,996,098	+		LRK54_RS13360	0.36	-0.2
2,996,098	+		LRK54_RS13360	0.36	-2.4
2,996,098	+		LRK54_RS13360	0.36	-1.0
2,996,098	+		LRK54_RS13360	0.36	-2.1
2,996,098	+		LRK54_RS13360	0.36	-0.8
2,996,098	+		LRK54_RS13360	0.36	-1.4
2,996,098	+		LRK54_RS13360	0.36	+1.1
2,996,098	+		LRK54_RS13360	0.36	-1.6
2,996,098	+		LRK54_RS13360	0.36	-1.2
2,996,098	+		LRK54_RS13360	0.36	-0.6
2,996,098	+		LRK54_RS13360	0.36	-0.3
2,996,098	+		LRK54_RS13360	0.36	-1.1
2,996,098	+		LRK54_RS13360	0.36	+0.4
2,996,099	-		LRK54_RS13360	0.36	+0.1
2,996,099	-		LRK54_RS13360	0.36	+0.2
2,996,099	-		LRK54_RS13360	0.36	-0.6
2,996,099	-		LRK54_RS13360	0.36	-0.6
2,996,099	-		LRK54_RS13360	0.36	-1.3
2,996,099	-		LRK54_RS13360	0.36	-1.4
2,996,099	-		LRK54_RS13360	0.36	-3.0
2,996,099	-		LRK54_RS13360	0.36	-2.8
2,996,099	-		LRK54_RS13360	0.36	-2.9
2,996,099	-		LRK54_RS13360	0.36	-2.0
2,996,099	-		LRK54_RS13360	0.36	-0.8
2,996,099	-		LRK54_RS13360	0.36	-2.2
2,996,099	-		LRK54_RS13360	0.36	-1.8
2,996,099	-		LRK54_RS13360	0.36	-1.9
2,996,099	-		LRK54_RS13360	0.36	-0.7
2,996,099	-		LRK54_RS13360	0.36	-2.5
2,996,200	+		LRK54_RS13360	0.42	-2.3
2,996,201	-		LRK54_RS13360	0.42	+0.8
2,996,201	-		LRK54_RS13360	0.42	-2.0
2,996,281	+		LRK54_RS13360	0.46	-0.0
2,996,281	+		LRK54_RS13360	0.46	+0.4
2,996,281	+		LRK54_RS13360	0.46	-2.9
2,996,281	+		LRK54_RS13360	0.46	-1.1
2,996,281	+		LRK54_RS13360	0.46	-1.1
2,996,281	+		LRK54_RS13360	0.46	-1.0
2,996,281	+		LRK54_RS13360	0.46	-2.3
2,996,281	+		LRK54_RS13360	0.46	-1.7
2,996,281	+		LRK54_RS13360	0.46	-1.0
2,996,281	+		LRK54_RS13360	0.46	+0.5
2,996,281	+		LRK54_RS13360	0.46	-0.9
2,996,281	+		LRK54_RS13360	0.46	-1.5
2,996,281	+		LRK54_RS13360	0.46	-0.2
2,996,282	-		LRK54_RS13360	0.46	-0.9
2,996,282	-		LRK54_RS13360	0.46	+0.5
2,996,282	-		LRK54_RS13360	0.46	-1.9
2,996,282	-		LRK54_RS13360	0.46	-1.6
2,996,282	-		LRK54_RS13360	0.46	-0.3
2,996,282	-		LRK54_RS13360	0.46	-2.6
2,996,282	-		LRK54_RS13360	0.46	-0.2
2,996,282	-		LRK54_RS13360	0.46	-1.5
2,996,282	-		LRK54_RS13360	0.46	-0.6
2,996,282	-		LRK54_RS13360	0.46	-2.9
2,996,282	-		LRK54_RS13360	0.46	-0.8
2,996,282	-		LRK54_RS13360	0.46	-2.4
2,996,317	+		LRK54_RS13360	0.48	+0.2
2,996,317	+		LRK54_RS13360	0.48	+0.3
2,996,317	+		LRK54_RS13360	0.48	-0.6
2,996,318	-		LRK54_RS13360	0.48	-1.6
2,996,327	-		LRK54_RS13360	0.49	-1.0
2,996,402	-		LRK54_RS13360	0.53	-1.8
2,996,402	-		LRK54_RS13360	0.53	-1.6
2,996,440	+		LRK54_RS13360	0.55	-1.4
2,996,440	+		LRK54_RS13360	0.55	-1.1
2,996,440	+		LRK54_RS13360	0.55	-2.3
2,996,440	+		LRK54_RS13360	0.55	+1.4
2,996,440	+		LRK54_RS13360	0.55	-3.1
2,996,440	+		LRK54_RS13360	0.55	-1.0
2,996,440	+		LRK54_RS13360	0.55	-1.1
2,996,440	+		LRK54_RS13360	0.55	-2.1
2,996,440	+		LRK54_RS13360	0.55	-0.6
2,996,440	+		LRK54_RS13360	0.55	-0.8
2,996,440	+		LRK54_RS13360	0.55	-2.6
2,996,440	+		LRK54_RS13360	0.55	-1.7
2,996,440	+		LRK54_RS13360	0.55	-1.1
2,996,440	+		LRK54_RS13360	0.55	-0.9
2,996,440	+		LRK54_RS13360	0.55	-1.1
2,996,440	+		LRK54_RS13360	0.55	-1.4
2,996,440	+				-0.8
2,996,440	+		LRK54_RS13360	0.55	-1.4
2,996,440	+		LRK54_RS13360	0.55	-2.3
2,996,440	+		LRK54_RS13360	0.55	-0.5
2,996,440	+		LRK54_RS13360	0.55	-1.2
2,996,441	-		LRK54_RS13360	0.56	-2.5
2,996,441	-		LRK54_RS13360	0.56	-1.0
2,996,441	-		LRK54_RS13360	0.56	-2.5
2,996,441	-		LRK54_RS13360	0.56	+0.2
2,996,441	-		LRK54_RS13360	0.56	-1.9
2,996,441	-		LRK54_RS13360	0.56	-0.3
2,996,441	-		LRK54_RS13360	0.56	-1.8
2,996,441	-		LRK54_RS13360	0.56	-1.9
2,996,441	-		LRK54_RS13360	0.56	-2.7
2,996,441	-		LRK54_RS13360	0.56	+0.2
2,996,441	-		LRK54_RS13360	0.56	-0.7
2,996,441	-		LRK54_RS13360	0.56	+1.5
2,996,441	-		LRK54_RS13360	0.56	-0.9
2,996,441	-		LRK54_RS13360	0.56	-1.9
2,996,441	-		LRK54_RS13360	0.56	-1.0
2,996,441	-		LRK54_RS13360	0.56	-2.0
2,996,485	+		LRK54_RS13360	0.58	-0.6
2,996,486	-		LRK54_RS13360	0.58	-1.5
2,996,486	-		LRK54_RS13360	0.58	-2.1
2,996,486	-		LRK54_RS13360	0.58	-1.8
2,996,486	-		LRK54_RS13360	0.58	-0.7
2,996,486	-		LRK54_RS13360	0.58	-0.7
2,996,539	+		LRK54_RS13360	0.61	+0.8
2,996,540	-		LRK54_RS13360	0.61	-0.2
2,996,540	-		LRK54_RS13360	0.61	+0.2
2,996,540	-		LRK54_RS13360	0.61	-0.6
2,996,542	+		LRK54_RS13360	0.61	-0.4
2,996,542	+		LRK54_RS13360	0.61	-1.2
2,996,542	+		LRK54_RS13360	0.61	-1.0
2,996,542	+		LRK54_RS13360	0.61	-2.6
2,996,543	-		LRK54_RS13360	0.61	-2.2
2,996,543	-		LRK54_RS13360	0.61	+1.8
2,996,543	-		LRK54_RS13360	0.61	+0.8
2,996,543	-		LRK54_RS13360	0.61	+0.2
2,996,543	-		LRK54_RS13360	0.61	-1.2
2,996,543	-		LRK54_RS13360	0.61	+1.4
2,996,543	-		LRK54_RS13360	0.61	-1.6
2,996,543	-		LRK54_RS13360	0.61	-1.8
2,996,543	-		LRK54_RS13360	0.61	-2.1
2,996,543	-		LRK54_RS13360	0.61	-2.3
2,996,543	-		LRK54_RS13360	0.61	-0.9
2,996,543	-		LRK54_RS13360	0.61	-1.4
2,996,698	+		LRK54_RS13360	0.70	-3.0
2,996,698	+		LRK54_RS13360	0.70	-2.6
2,996,698	+		LRK54_RS13360	0.70	-0.2
2,996,698	+		LRK54_RS13360	0.70	-0.7
2,996,698	+		LRK54_RS13360	0.70	-0.4
2,996,698	+		LRK54_RS13360	0.70	-1.7
2,996,698	+		LRK54_RS13360	0.70	-0.1
2,996,698	+		LRK54_RS13360	0.70	+0.2
2,996,698	+		LRK54_RS13360	0.70	-2.0
2,996,698	+		LRK54_RS13360	0.70	-0.6
2,996,698	+		LRK54_RS13360	0.70	-0.7
2,996,698	+		LRK54_RS13360	0.70	-0.6
2,996,698	+		LRK54_RS13360	0.70	-2.0
2,996,698	+		LRK54_RS13360	0.70	-1.9
2,996,698	+		LRK54_RS13360	0.70	-0.8
2,996,698	+		LRK54_RS13360	0.70	-1.6
2,996,698	+		LRK54_RS13360	0.70	-2.6
2,996,698	+		LRK54_RS13360	0.70	-1.3
2,996,698	+		LRK54_RS13360	0.70	-3.3
2,996,698	+		LRK54_RS13360	0.70	-1.9
2,996,698	+		LRK54_RS13360	0.70	-3.1
2,996,698	+		LRK54_RS13360	0.70	-0.9
2,996,698	+		LRK54_RS13360	0.70	-0.8
2,996,698	+		LRK54_RS13360	0.70	-1.8
2,996,699	-		LRK54_RS13360	0.70	-1.0
2,996,699	-		LRK54_RS13360	0.70	-3.0
2,996,699	-		LRK54_RS13360	0.70	-1.2
2,996,699	-		LRK54_RS13360	0.70	+0.6
2,996,699	-		LRK54_RS13360	0.70	+0.4
2,996,699	-		LRK54_RS13360	0.70	-2.7
2,996,699	-		LRK54_RS13360	0.70	-0.2
2,996,699	-		LRK54_RS13360	0.70	-1.0
2,996,699	-		LRK54_RS13360	0.70	-2.1
2,996,699	-		LRK54_RS13360	0.70	-2.4
2,996,699	-		LRK54_RS13360	0.70	-2.6
2,996,699	-		LRK54_RS13360	0.70	-1.2
2,996,699	-		LRK54_RS13360	0.70	-1.6
2,996,699	-		LRK54_RS13360	0.70	+0.6
2,996,699	-		LRK54_RS13360	0.70	-1.0
2,996,699	-		LRK54_RS13360	0.70	-1.1
2,996,699	-		LRK54_RS13360	0.70	+0.8
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