Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14760

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
1,109,088	+		HMPREF1058_RS14765	0.63	+0.5
1,109,215	+		HMPREF1058_RS14765	0.76	+0.2
1,109,243	-		HMPREF1058_RS14765	0.79	-0.2
1,109,275	+		HMPREF1058_RS14765	0.82	-0.1
1,109,275	+		HMPREF1058_RS14765	0.82	-1.0
1,109,275	+		HMPREF1058_RS14765	0.82	-0.7
1,109,276	-		HMPREF1058_RS14765	0.82	-0.1
1,109,276	-		HMPREF1058_RS14765	0.82	-0.7
1,109,278	+		HMPREF1058_RS14765	0.83	-0.1
1,109,448	+				+0.5
1,109,449	-				-0.2
1,109,461	-				+0.1
1,109,481	+				+0.8
1,109,483	+				+1.4
1,109,492	+				+0.3
1,109,512	+				-0.0
1,109,559	+				-0.4
1,109,559	+				+0.1
1,109,619	-				-0.1
1,109,619	-				-1.4
1,109,654	-				+0.1
1,109,658	-				-1.2
1,109,677	+				+0.2
1,109,865	+				+1.2
1,109,867	+				+0.5
1,109,869	+				+0.9
1,109,869	+				+0.5
1,109,871	+				+0.3
1,109,871	+				+0.9
1,109,872	-				-1.0
1,109,872	-				-1.9
1,109,872	-				-1.9
1,109,902	-				-1.0
1,109,975	-				-1.2
1,109,978	+				+0.5
1,110,022	+				-1.4
1,110,025	-				-1.2
1,110,025	-				-0.3
1,110,030	-				-0.6
1,110,075	-				-1.7
1,110,150	+				-1.1
1,110,300	+		HMPREF1058_RS14760	0.15	-0.5
1,110,301	-		HMPREF1058_RS14760	0.15	-1.1
1,110,330	+		HMPREF1058_RS14760	0.16	-0.9
1,110,331	-		HMPREF1058_RS14760	0.16	-0.8
1,110,344	-		HMPREF1058_RS14760	0.17	-2.3
1,110,383	+		HMPREF1058_RS14760	0.19	-1.4
1,110,468	+		HMPREF1058_RS14760	0.23	-1.3
1,110,552	-				-1.7
1,110,627	+		HMPREF1058_RS14760	0.31	-1.0
1,110,659	+		HMPREF1058_RS14760	0.33	-1.2
1,110,659	+		HMPREF1058_RS14760	0.33	-0.9
1,110,660	-		HMPREF1058_RS14760	0.33	-1.5
1,110,660	-		HMPREF1058_RS14760	0.33	-1.7
1,110,709	+		HMPREF1058_RS14760	0.35	-0.4
1,110,709	+		HMPREF1058_RS14760	0.35	-1.6
1,110,763	-		HMPREF1058_RS14760	0.38	-0.0
1,110,799	+		HMPREF1058_RS14760	0.39	-1.6
1,110,805	-		HMPREF1058_RS14760	0.40	-0.3
1,110,890	+		HMPREF1058_RS14760	0.44	-1.1
1,110,900	+		HMPREF1058_RS14760	0.44	-0.8
1,110,901	-		HMPREF1058_RS14760	0.45	+0.8
1,110,905	-		HMPREF1058_RS14760	0.45	-1.7
1,110,916	-		HMPREF1058_RS14760	0.45	+0.4
1,111,001	+		HMPREF1058_RS14760	0.49	-0.6
1,111,027	+		HMPREF1058_RS14760	0.51	-0.9
1,111,049	+		HMPREF1058_RS14760	0.52	+0.2
1,111,049	+		HMPREF1058_RS14760	0.52	+0.4
1,111,049	+		HMPREF1058_RS14760	0.52	-1.2
1,111,049	+		HMPREF1058_RS14760	0.52	-1.3
1,111,049	+		HMPREF1058_RS14760	0.52	-2.4
1,111,050	-		HMPREF1058_RS14760	0.52	-0.0
1,111,050	-		HMPREF1058_RS14760	0.52	-0.9
1,111,050	-		HMPREF1058_RS14760	0.52	-1.5
1,111,050	-		HMPREF1058_RS14760	0.52	-0.3
1,111,051	+		HMPREF1058_RS14760	0.52	-1.6
1,111,093	+		HMPREF1058_RS14760	0.54	-1.5
1,111,094	-		HMPREF1058_RS14760	0.54	-1.2
1,111,100	-		HMPREF1058_RS14760	0.54	+0.1
1,111,101	+		HMPREF1058_RS14760	0.54	-0.7
1,111,101	+		HMPREF1058_RS14760	0.54	-2.0
1,111,105	-		HMPREF1058_RS14760	0.55	-0.4
1,111,110	-		HMPREF1058_RS14760	0.55	-1.0
1,111,110	-		HMPREF1058_RS14760	0.55	-0.6
1,111,110	-		HMPREF1058_RS14760	0.55	-0.7
1,111,128	+		HMPREF1058_RS14760	0.56	-1.4
1,111,131	+		HMPREF1058_RS14760	0.56	-0.6
1,111,152	+		HMPREF1058_RS14760	0.57	-1.5
1,111,193	+		HMPREF1058_RS14760	0.59	-0.7
1,111,194	-		HMPREF1058_RS14760	0.59	-1.3
1,111,225	+		HMPREF1058_RS14760	0.61	-2.2
1,111,226	-		HMPREF1058_RS14760	0.61	-1.4
1,111,226	-		HMPREF1058_RS14760	0.61	-1.0
1,111,230	+		HMPREF1058_RS14760	0.61	-1.7
1,111,322	+		HMPREF1058_RS14760	0.65	-1.5
1,111,323	-		HMPREF1058_RS14760	0.65	+1.0
1,111,325	-		HMPREF1058_RS14760	0.65	-0.6
1,111,340	-		HMPREF1058_RS14760	0.66	-1.6
1,111,342	-		HMPREF1058_RS14760	0.66	-1.4
1,111,349	+		HMPREF1058_RS14760	0.67	-0.7
1,111,349	+		HMPREF1058_RS14760	0.67	-0.1
1,111,349	+		HMPREF1058_RS14760	0.67	-1.0
1,111,429	+		HMPREF1058_RS14760	0.71	-1.6
1,111,432	-		HMPREF1058_RS14760	0.71	-0.4
1,111,436	+		HMPREF1058_RS14760	0.71	-0.2
1,111,436	+		HMPREF1058_RS14760	0.71	-1.5
1,111,437	-		HMPREF1058_RS14760	0.71	-1.7
1,111,461	+		HMPREF1058_RS14760	0.72	-1.0
1,111,505	-		HMPREF1058_RS14760	0.74	-0.4
1,111,507	-		HMPREF1058_RS14760	0.74	-0.8
1,111,509	+		HMPREF1058_RS14760	0.75	-0.5
1,111,515	-		HMPREF1058_RS14760	0.75	-0.4
1,111,542	+		HMPREF1058_RS14760	0.76	-0.7
1,111,543	-		HMPREF1058_RS14760	0.76	-0.9
1,111,545	+		HMPREF1058_RS14760	0.76	-0.9
1,111,545	+		HMPREF1058_RS14760	0.76	-0.9
1,111,546	-		HMPREF1058_RS14760	0.76	-1.9
1,111,546	-		HMPREF1058_RS14760	0.76	-0.9
1,111,546	-		HMPREF1058_RS14760	0.76	-1.3
1,111,595	+		HMPREF1058_RS14760	0.79	-0.7
1,111,607	+		HMPREF1058_RS14760	0.79	-0.8
1,111,607	+		HMPREF1058_RS14760	0.79	+0.7
1,111,607	+		HMPREF1058_RS14760	0.79	-1.4
1,111,607	+		HMPREF1058_RS14760	0.79	-0.5
1,111,660	+		HMPREF1058_RS14760	0.82	-0.2
1,111,661	-		HMPREF1058_RS14760	0.82	-2.1
1,111,661	-		HMPREF1058_RS14760	0.82	-0.5
1,111,662	+		HMPREF1058_RS14760	0.82	-2.0
1,111,666	+		HMPREF1058_RS14760	0.82	-1.0
1,111,666	+		HMPREF1058_RS14760	0.82	-0.0
1,111,666	+		HMPREF1058_RS14760	0.82	-1.6
1,111,667	-		HMPREF1058_RS14760	0.82	-0.8
1,111,673	-		HMPREF1058_RS14760	0.83	-1.4
1,111,683	+		HMPREF1058_RS14760	0.83	-0.5
1,111,684	-		HMPREF1058_RS14760	0.83	-0.4
1,111,703	+		HMPREF1058_RS14760	0.84	+0.1
1,111,703	+		HMPREF1058_RS14760	0.84	+0.4
1,111,708	+		HMPREF1058_RS14760	0.84	-2.0
1,111,726	+		HMPREF1058_RS14760	0.85	-0.2
1,111,727	-		HMPREF1058_RS14760	0.85	-0.9
1,111,727	-		HMPREF1058_RS14760	0.85	-2.0
1,111,816	+		HMPREF1058_RS14760	0.90	-1.0
1,111,819	-		HMPREF1058_RS14760	0.90	-2.2
1,111,819	-		HMPREF1058_RS14760	0.90	-1.6
1,111,860	+				-1.0
1,111,863	-				-0.5
1,111,863	-				-0.2
1,111,867	+				-1.5
1,111,880	+				-0.7
1,111,912	+				-1.4
1,111,913	-				-0.7
1,111,930	-				-0.6
1,111,932	+				-1.3
1,111,936	-				-2.8
1,111,962	-				-1.4
1,111,993	+				-0.7
1,111,993	+				-0.2
1,111,994	-				+0.2
1,111,996	-				-1.3
1,112,074	+				-0.5
1,112,075	-				-1.2
1,112,210	+		HMPREF1058_RS14755	0.15	-1.2
1,112,210	+		HMPREF1058_RS14755	0.15	-1.4
1,112,211	-		HMPREF1058_RS14755	0.15	-2.2
1,112,211	-		HMPREF1058_RS14755	0.15	-2.7
1,112,219	-		HMPREF1058_RS14755	0.16	-0.9
1,112,234	-		HMPREF1058_RS14755	0.17	-0.9
1,112,311	-		HMPREF1058_RS14755	0.24	+1.0
1,112,349	+		HMPREF1058_RS14755	0.27	-1.2
1,112,350	-		HMPREF1058_RS14755	0.27	-1.0
1,112,354	+		HMPREF1058_RS14755	0.28	-1.1
1,112,354	+		HMPREF1058_RS14755	0.28	-1.2
1,112,355	-		HMPREF1058_RS14755	0.28	-1.9
1,112,355	-		HMPREF1058_RS14755	0.28	-3.9
1,112,369	+		HMPREF1058_RS14755	0.29	-0.8
1,112,379	+		HMPREF1058_RS14755	0.30	-0.9
1,112,381	+		HMPREF1058_RS14755	0.30	-1.8
1,112,381	+		HMPREF1058_RS14755	0.30	-1.1
1,112,381	+		HMPREF1058_RS14755	0.30	-4.3
1,112,382	-		HMPREF1058_RS14755	0.30	-1.4
1,112,392	+		HMPREF1058_RS14755	0.31	-0.9
1,112,393	-		HMPREF1058_RS14755	0.31	-1.1
1,112,397	+		HMPREF1058_RS14755	0.32	-1.3
1,112,403	+		HMPREF1058_RS14755	0.32	-1.3
1,112,403	+		HMPREF1058_RS14755	0.32	-0.8
1,112,416	+		HMPREF1058_RS14755	0.33	-1.4
1,112,476	-		HMPREF1058_RS14755	0.38	+0.2
1,112,481	+		HMPREF1058_RS14755	0.39	-0.7
1,112,482	-		HMPREF1058_RS14755	0.39	+0.3
1,112,499	+		HMPREF1058_RS14755	0.41	-1.1
1,112,500	-		HMPREF1058_RS14755	0.41	-0.2
1,112,513	+		HMPREF1058_RS14755	0.42	+1.4
1,112,563	+		HMPREF1058_RS14755	0.46	-0.7
1,112,563	+		HMPREF1058_RS14755	0.46	-0.3
1,112,569	-		HMPREF1058_RS14755	0.47	+1.4
1,112,619	-		HMPREF1058_RS14755	0.51	-0.8
1,112,619	-		HMPREF1058_RS14755	0.51	-1.5
1,112,701	+		HMPREF1058_RS14755	0.58	-1.7
1,112,701	+		HMPREF1058_RS14755	0.58	+0.4
1,112,702	-		HMPREF1058_RS14755	0.58	-1.0
1,112,702	-		HMPREF1058_RS14755	0.58	-4.5
1,112,730	+		HMPREF1058_RS14755	0.61	-0.8
1,112,769	+		HMPREF1058_RS14755	0.64	-1.1
1,112,770	-		HMPREF1058_RS14755	0.64	-3.4
1,112,770	-		HMPREF1058_RS14755	0.64	-2.3
1,112,770	-		HMPREF1058_RS14755	0.64	+0.0
1,112,874	+		HMPREF1058_RS14755	0.73	-1.0
1,112,941	-		HMPREF1058_RS14755	0.79	-0.8
1,112,941	-		HMPREF1058_RS14755	0.79	+0.2
1,112,944	+		HMPREF1058_RS14755	0.79	-1.0
1,112,977	-		HMPREF1058_RS14755	0.82	-1.0
1,112,992	+		HMPREF1058_RS14755	0.84	-1.2