Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14735

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
1,115,119	-		HMPREF1058_RS14740	0.13	-1.6
1,115,382	+		HMPREF1058_RS14740	0.38	-0.7
1,115,457	+		HMPREF1058_RS14740	0.46	-0.4
1,115,458	-		HMPREF1058_RS14740	0.46	-2.4
1,115,458	-		HMPREF1058_RS14740	0.46	-3.2
1,115,462	-		HMPREF1058_RS14740	0.46	-1.9
1,115,474	+		HMPREF1058_RS14740	0.47	-1.8
1,115,571	+		HMPREF1058_RS14740	0.57	-2.4
1,115,571	+		HMPREF1058_RS14740	0.57	-1.2
1,115,572	-		HMPREF1058_RS14740	0.57	+0.0
1,115,627	-		HMPREF1058_RS14740	0.62	-0.8
1,116,057	-				-1.0
1,116,066	+				-0.5
1,116,330	-		HMPREF1058_RS14735	0.31	-0.1
1,116,635	+		HMPREF1058_RS14735	0.61	-2.1
1,116,635	+		HMPREF1058_RS14735	0.61	-1.9
1,116,636	-		HMPREF1058_RS14735	0.62	-2.3
1,116,757	-		HMPREF1058_RS14735	0.74	-1.8
1,116,772	+		HMPREF1058_RS14735	0.75	+0.2
1,116,787	+		HMPREF1058_RS14735	0.76	+0.1
1,116,788	-		HMPREF1058_RS14735	0.77	-0.2
1,116,788	-		HMPREF1058_RS14735	0.77	-1.8
1,116,885	+		HMPREF1058_RS14735	0.86	+0.4
1,116,886	-		HMPREF1058_RS14735	0.86	-1.5
1,116,886	-		HMPREF1058_RS14735	0.86	-0.5
1,116,886	-		HMPREF1058_RS14735	0.86	-1.6
1,116,886	-		HMPREF1058_RS14735	0.86	-0.8
1,117,219	-				-0.8
1,117,386	+				+0.2
1,117,390	+				-0.2
1,117,390	+				+0.1
1,117,391	-				-1.3
1,117,463	+				-0.4
1,117,509	-				-0.4
1,117,524	-				+0.6
1,117,600	-				-0.5
1,117,983	+		HMPREF1058_RS14730	0.28	+0.0
1,117,983	+		HMPREF1058_RS14730	0.28	+0.4
1,118,016	+		HMPREF1058_RS14730	0.31	-1.4
1,118,019	+		HMPREF1058_RS14730	0.31	-0.4
1,118,020	-		HMPREF1058_RS14730	0.31	+0.2