Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11500

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11505 and HMPREF1058_RS11500 are separated by 91 nucleotidesHMPREF1058_RS11500 and HMPREF1058_RS11495 are separated by 309 nucleotidesHMPREF1058_RS11495 and HMPREF1058_RS11490 are separated by 201 nucleotides HMPREF1058_RS11505: HMPREF1058_RS11505 - polyprenyl synthetase family protein, at 362,436 to 363,410 _RS11505 HMPREF1058_RS11500: HMPREF1058_RS11500 - DNA polymerase I, at 363,502 to 366,417 _RS11500 HMPREF1058_RS11495: HMPREF1058_RS11495 - DUF3836 domain-containing protein, at 366,727 to 367,113 _RS11495 HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418 _RS11490 Position (kb) 363 364 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1at 363.441 kb on - strandat 364.802 kb on + strand, within HMPREF1058_RS11500at 364.897 kb on + strand, within HMPREF1058_RS11500at 364.976 kb on + strand, within HMPREF1058_RS11500at 365.213 kb on + strand, within HMPREF1058_RS11500at 365.242 kb on + strand, within HMPREF1058_RS11500at 365.242 kb on + strand, within HMPREF1058_RS11500at 365.243 kb on - strand, within HMPREF1058_RS11500at 365.243 kb on - strand, within HMPREF1058_RS11500at 365.244 kb on + strand, within HMPREF1058_RS11500at 365.261 kb on + strand, within HMPREF1058_RS11500at 365.262 kb on - strand, within HMPREF1058_RS11500at 365.324 kb on + strand, within HMPREF1058_RS11500at 365.449 kb on + strand, within HMPREF1058_RS11500at 365.501 kb on + strand, within HMPREF1058_RS11500at 365.549 kb on - strand, within HMPREF1058_RS11500at 365.549 kb on - strand, within HMPREF1058_RS11500at 365.549 kb on - strand, within HMPREF1058_RS11500at 365.550 kb on + strand, within HMPREF1058_RS11500at 365.550 kb on + strand, within HMPREF1058_RS11500at 365.551 kb on - strand, within HMPREF1058_RS11500at 365.551 kb on - strand, within HMPREF1058_RS11500at 365.599 kb on - strand, within HMPREF1058_RS11500at 365.796 kb on + strand, within HMPREF1058_RS11500at 365.796 kb on + strand, within HMPREF1058_RS11500at 365.854 kb on + strand, within HMPREF1058_RS11500at 365.856 kb on + strand, within HMPREF1058_RS11500at 365.857 kb on - strand, within HMPREF1058_RS11500at 365.862 kb on - strand, within HMPREF1058_RS11500at 365.868 kb on - strand, within HMPREF1058_RS11500at 365.877 kb on + strand, within HMPREF1058_RS11500at 365.926 kb on + strand, within HMPREF1058_RS11500at 365.958 kb on + strand, within HMPREF1058_RS11500at 365.994 kb on - strand, within HMPREF1058_RS11500at 366.033 kb on + strand, within HMPREF1058_RS11500at 366.072 kb on + strand, within HMPREF1058_RS11500at 366.083 kb on + strand, within HMPREF1058_RS11500at 366.243 kb on + strandat 366.281 kb on + strandat 366.357 kb on + strandat 366.422 kb on + strandat 366.423 kb on - strandat 366.427 kb on - strandat 366.436 kb on - strandat 366.478 kb on + strandat 366.492 kb on + strandat 366.534 kb on + strandat 366.534 kb on + strandat 366.562 kb on + strandat 366.571 kb on + strandat 366.712 kb on + strandat 366.713 kb on - strandat 366.715 kb on + strandat 366.717 kb on + strandat 366.717 kb on + strandat 366.717 kb on + strandat 366.718 kb on - strandat 366.773 kb on + strand, within HMPREF1058_RS11495at 366.777 kb on + strand, within HMPREF1058_RS11495at 366.778 kb on - strand, within HMPREF1058_RS11495at 366.842 kb on + strand, within HMPREF1058_RS11495at 366.843 kb on - strand, within HMPREF1058_RS11495at 366.851 kb on + strand, within HMPREF1058_RS11495at 366.895 kb on - strand, within HMPREF1058_RS11495at 366.897 kb on + strand, within HMPREF1058_RS11495at 366.898 kb on - strand, within HMPREF1058_RS11495at 366.898 kb on - strand, within HMPREF1058_RS11495at 366.901 kb on + strand, within HMPREF1058_RS11495at 366.904 kb on - strand, within HMPREF1058_RS11495at 366.916 kb on + strand, within HMPREF1058_RS11495at 366.916 kb on + strand, within HMPREF1058_RS11495at 366.942 kb on + strand, within HMPREF1058_RS11495at 367.011 kb on + strand, within HMPREF1058_RS11495at 367.011 kb on + strand, within HMPREF1058_RS11495at 367.012 kb on - strand, within HMPREF1058_RS11495at 367.015 kb on + strandat 367.016 kb on - strand, within HMPREF1058_RS11495at 367.023 kb on + strand, within HMPREF1058_RS11495at 367.035 kb on + strandat 367.045 kb on + strand, within HMPREF1058_RS11495at 367.076 kb on + strandat 367.077 kb on - strandat 367.077 kb on - strandat 367.101 kb on + strandat 367.102 kb on - strandat 367.111 kb on + strandat 367.111 kb on + strandat 367.111 kb on + strandat 367.111 kb on + strandat 367.111 kb on + strandat 367.123 kb on - strandat 367.123 kb on - strandat 367.214 kb on - strandat 367.216 kb on - strandat 367.290 kb on + strandat 367.291 kb on - strandat 367.309 kb on + strandat 367.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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363,441 - -0.3
364,802 + HMPREF1058_RS11500 0.45 -0.4
364,897 + HMPREF1058_RS11500 0.48 +0.3
364,976 + HMPREF1058_RS11500 0.51 -0.9
365,213 + HMPREF1058_RS11500 0.59 -2.5
365,242 + HMPREF1058_RS11500 0.60 -2.1
365,242 + HMPREF1058_RS11500 0.60 -2.1
365,243 - HMPREF1058_RS11500 0.60 -1.3
365,243 - HMPREF1058_RS11500 0.60 -1.5
365,244 + HMPREF1058_RS11500 0.60 -1.8
365,261 + HMPREF1058_RS11500 0.60 -0.7
365,262 - HMPREF1058_RS11500 0.60 -2.7
365,324 + HMPREF1058_RS11500 0.62 -1.5
365,449 + HMPREF1058_RS11500 0.67 +1.0
365,501 + HMPREF1058_RS11500 0.69 -1.3
365,549 - HMPREF1058_RS11500 0.70 +0.9
365,549 - HMPREF1058_RS11500 0.70 -0.9
365,549 - HMPREF1058_RS11500 0.70 -2.9
365,550 + HMPREF1058_RS11500 0.70 -1.4
365,550 + HMPREF1058_RS11500 0.70 -1.7
365,551 - HMPREF1058_RS11500 0.70 -0.7
365,551 - HMPREF1058_RS11500 0.70 -2.9
365,599 - HMPREF1058_RS11500 0.72 -2.0
365,796 + HMPREF1058_RS11500 0.79 +0.8
365,796 + HMPREF1058_RS11500 0.79 -1.8
365,854 + HMPREF1058_RS11500 0.81 +0.0
365,856 + HMPREF1058_RS11500 0.81 -0.1
365,857 - HMPREF1058_RS11500 0.81 -0.4
365,862 - HMPREF1058_RS11500 0.81 -1.9
365,868 - HMPREF1058_RS11500 0.81 -0.7
365,877 + HMPREF1058_RS11500 0.81 -0.8
365,926 + HMPREF1058_RS11500 0.83 +0.9
365,958 + HMPREF1058_RS11500 0.84 -0.6
365,994 - HMPREF1058_RS11500 0.85 -1.1
366,033 + HMPREF1058_RS11500 0.87 -0.2
366,072 + HMPREF1058_RS11500 0.88 -0.9
366,083 + HMPREF1058_RS11500 0.89 -0.6
366,243 + -1.0
366,281 + -0.9
366,357 + -2.2
366,422 + -0.3
366,423 - +0.1
366,427 - -0.5
366,436 - -0.6
366,478 + +0.4
366,492 + +0.2
366,534 + -0.4
366,534 + +0.3
366,562 + +0.6
366,571 + +0.1
366,712 + +0.8
366,713 - -0.2
366,715 + -0.4
366,717 + -0.7
366,717 + +0.4
366,717 + -0.9
366,718 - +0.7
366,773 + HMPREF1058_RS11495 0.12 +0.2
366,777 + HMPREF1058_RS11495 0.13 +0.9
366,778 - HMPREF1058_RS11495 0.13 -0.8
366,842 + HMPREF1058_RS11495 0.30 -0.8
366,843 - HMPREF1058_RS11495 0.30 -0.2
366,851 + HMPREF1058_RS11495 0.32 -0.4
366,895 - HMPREF1058_RS11495 0.43 -1.2
366,897 + HMPREF1058_RS11495 0.44 -0.3
366,898 - HMPREF1058_RS11495 0.44 +1.3
366,898 - HMPREF1058_RS11495 0.44 -0.6
366,901 + HMPREF1058_RS11495 0.45 -0.0
366,904 - HMPREF1058_RS11495 0.46 -0.2
366,916 + HMPREF1058_RS11495 0.49 -0.3
366,916 + HMPREF1058_RS11495 0.49 -0.8
366,942 + HMPREF1058_RS11495 0.56 +1.3
367,011 + HMPREF1058_RS11495 0.73 -0.6
367,011 + HMPREF1058_RS11495 0.73 +0.4
367,012 - HMPREF1058_RS11495 0.74 -0.4
367,015 + -0.1
367,016 - HMPREF1058_RS11495 0.75 -0.6
367,023 + HMPREF1058_RS11495 0.76 +1.0
367,035 + +1.1
367,045 + HMPREF1058_RS11495 0.82 +0.3
367,076 + +0.8
367,077 - +0.1
367,077 - +1.2
367,101 + -0.0
367,102 - +0.0
367,111 + +0.0
367,111 + +0.1
367,111 + +0.4
367,111 + +0.2
367,111 + +0.2
367,123 - -0.3
367,123 - +0.3
367,214 - +1.2
367,216 - +0.2
367,290 + +0.1
367,291 - +0.9
367,309 + -1.9
367,332 + +1.2

Or see this region's nucleotide sequence