Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08355

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
1,182,986	-		HMPREF1058_RS08365	0.76	-0.0
1,183,049	+		HMPREF1058_RS08365	0.79	-0.3
1,183,061	+		HMPREF1058_RS08365	0.80	-0.4
1,183,062	-		HMPREF1058_RS08365	0.80	+0.7
1,183,063	+		HMPREF1058_RS08365	0.80	-0.0
1,183,438	-				+0.4
1,183,447	+				-2.4
1,183,447	+				-1.0
1,183,448	-				-0.1
1,183,448	-				-0.1
1,183,510	+				+0.8
1,183,510	+				-0.1
1,183,545	-				+1.3
1,183,545	-				+0.1
1,183,551	-				+0.3
1,183,662	-		HMPREF1058_RS08360	0.20	+0.7
1,183,765	-		HMPREF1058_RS08360	0.50	+0.7
1,183,776	+		HMPREF1058_RS08360	0.54	-0.8
1,183,777	-		HMPREF1058_RS08360	0.54	+0.3
1,183,869	-		HMPREF1058_RS08360	0.81	+0.3
1,183,869	-		HMPREF1058_RS08360	0.81	-0.0
1,183,890	-		HMPREF1058_RS08360	0.87	-0.7
1,184,039	+		HMPREF1058_RS08355	0.42	-0.9
1,184,222	-				-0.1
1,184,226	-				+0.0
1,184,306	-				+0.0
1,184,495	+		HMPREF1058_RS08350	0.10	+0.9
1,184,495	+		HMPREF1058_RS08350	0.10	-0.4
1,184,496	-		HMPREF1058_RS08350	0.10	-0.6
1,184,557	+		HMPREF1058_RS08350	0.15	-0.3
1,184,608	-		HMPREF1058_RS08350	0.20	-0.3
1,184,674	-		HMPREF1058_RS08350	0.25	-0.7
1,184,721	+		HMPREF1058_RS08350	0.29	-0.1
1,184,721	+		HMPREF1058_RS08350	0.29	+2.2
1,184,723	+		HMPREF1058_RS08350	0.29	+0.7
1,184,724	-		HMPREF1058_RS08350	0.29	+0.1