Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04070 and HMPREF1058_RS04065 are separated by 19 nucleotides HMPREF1058_RS04065 and HMPREF1058_RS04060 are separated by 12 nucleotides
HMPREF1058_RS04070: HMPREF1058_RS04070 - hypothetical protein, at 122,116 to 123,213
_RS04070
HMPREF1058_RS04065: HMPREF1058_RS04065 - VWA domain-containing protein, at 123,233 to 124,231
_RS04065
HMPREF1058_RS04060: HMPREF1058_RS04060 - VWA domain-containing protein, at 124,244 to 125,266
_RS04060
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.395 kb on - strand, within HMPREF1058_RS04070 at 122.415 kb on + strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.579 kb on + strand, within HMPREF1058_RS04070 at 122.613 kb on - strand, within HMPREF1058_RS04070 at 122.654 kb on - strand, within HMPREF1058_RS04070 at 122.667 kb on - strand, within HMPREF1058_RS04070 at 122.800 kb on + strand, within HMPREF1058_RS04070 at 122.939 kb on - strand, within HMPREF1058_RS04070 at 123.175 kb on + strand at 123.194 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.197 kb on - strand at 123.284 kb on + strand at 123.284 kb on + strand at 123.285 kb on - strand at 123.285 kb on - strand at 123.289 kb on - strand at 123.292 kb on - strand at 123.486 kb on + strand, within HMPREF1058_RS04065 at 123.529 kb on + strand, within HMPREF1058_RS04065 at 124.089 kb on + strand, within HMPREF1058_RS04065 at 124.274 kb on + strand at 124.288 kb on - strand at 124.909 kb on - strand, within HMPREF1058_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 122,395 - HMPREF1058_RS04070 0.25 +0.2 122,415 + HMPREF1058_RS04070 0.27 -0.8 122,533 - HMPREF1058_RS04070 0.38 +2.2 122,533 - HMPREF1058_RS04070 0.38 +2.6 122,579 + HMPREF1058_RS04070 0.42 +0.3 122,613 - HMPREF1058_RS04070 0.45 -1.2 122,654 - HMPREF1058_RS04070 0.49 -3.4 122,667 - HMPREF1058_RS04070 0.50 -0.4 122,800 + HMPREF1058_RS04070 0.62 +0.6 122,939 - HMPREF1058_RS04070 0.75 +1.2 123,175 + +0.8 123,194 + -2.7 123,196 + +1.4 123,196 + +0.4 123,196 + -0.1 123,196 + +0.0 123,196 + -0.5 123,197 - -0.4 123,284 + -1.3 123,284 + +0.6 123,285 - +0.6 123,285 - +0.2 123,289 - +0.2 123,292 - -0.8 123,486 + HMPREF1058_RS04065 0.25 -1.6 123,529 + HMPREF1058_RS04065 0.30 -0.6 124,089 + HMPREF1058_RS04065 0.86 -0.0 124,274 + -1.2 124,288 - -0.2 124,909 - HMPREF1058_RS04060 0.65 -0.2
Or see this region's nucleotide sequence