Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03110

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
9,786	+				+0.3
9,787	-				-1.6
9,793	-				+0.9
9,844	-				-0.2
9,853	+				+0.4
9,862	+				-0.8
9,862	+				+0.1
9,924	-				-2.2
9,948	-		HMPREF1058_RS03110	0.11	-0.5
9,986	+		HMPREF1058_RS03110	0.16	-2.5
9,987	-		HMPREF1058_RS03110	0.16	-0.6
10,001	+		HMPREF1058_RS03110	0.18	-0.5
10,001	+		HMPREF1058_RS03110	0.18	-0.2
10,002	-		HMPREF1058_RS03110	0.18	-0.9
10,003	+		HMPREF1058_RS03110	0.18	-1.0
10,067	+		HMPREF1058_RS03110	0.26	-0.2
10,072	+		HMPREF1058_RS03110	0.27	-0.9
10,073	-		HMPREF1058_RS03110	0.27	-0.7
10,079	+		HMPREF1058_RS03110	0.28	-2.3
10,079	+		HMPREF1058_RS03110	0.28	-1.6
10,084	-		HMPREF1058_RS03110	0.28	-0.7
10,300	+		HMPREF1058_RS03110	0.57	-0.6
10,320	-		HMPREF1058_RS03110	0.59	-0.0
10,336	-		HMPREF1058_RS03110	0.61	-1.1
10,494	-		HMPREF1058_RS03110	0.82	-1.5
10,494	-		HMPREF1058_RS03110	0.82	-1.1
10,504	-		HMPREF1058_RS03110	0.83	-2.6
10,504	-		HMPREF1058_RS03110	0.83	-1.5
10,507	-		HMPREF1058_RS03110	0.84	-0.2
10,507	-		HMPREF1058_RS03110	0.84	-0.6
10,550	+		HMPREF1058_RS03110	0.89	-2.2
10,575	-				-1.6
10,585	-				-0.6
10,607	+				-0.3
10,607	+				+0.1
10,608	-				+0.3
10,609	+				+0.0
10,609	+				-2.4
10,620	-				+1.4
10,626	+				-0.8
10,637	+				-0.3
10,668	-				+0.0
10,723	+		HMPREF1058_RS03105	0.13	-0.6
10,761	-		HMPREF1058_RS03105	0.18	-1.6
10,976	-		HMPREF1058_RS03105	0.47	-1.4
11,062	+		HMPREF1058_RS03105	0.58	-1.2
11,225	-		HMPREF1058_RS03105	0.80	-1.5
11,231	+		HMPREF1058_RS03105	0.81	-0.1
11,293	+		HMPREF1058_RS03105	0.89	-1.3
11,299	+				-1.0
11,300	-				+2.0
11,300	-				-0.2
11,320	+				+0.0
11,340	+				+0.0
11,340	+				-2.3
11,366	+				-0.7
11,400	-				+0.7
11,418	-				-0.2