Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20417 and SM_b20418 are separated by 8 nucleotides SM_b20418 and SM_b20419 overlap by 1 nucleotides
SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964
_b20417
SM_b20418: SM_b20418 - glycerol-3-phosphate ABC transporter permease, at 431,973 to 432,821
_b20418
SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870
_b20419
Position (kb) 431
432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 431.119 kb on + strand at 431.120 kb on - strand at 431.120 kb on - strand at 431.189 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.749 kb on + strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.764 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.957 kb on - strand at 432.001 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.055 kb on - strand at 432.055 kb on - strand at 432.057 kb on + strand at 432.057 kb on + strand at 432.058 kb on - strand, within SM_b20418 at 432.060 kb on - strand, within SM_b20418 at 432.108 kb on - strand, within SM_b20418 at 432.145 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.572 kb on + strand, within SM_b20418 at 432.603 kb on + strand, within SM_b20418 at 432.604 kb on - strand, within SM_b20418 at 432.618 kb on + strand, within SM_b20418 at 432.619 kb on - strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.819 kb on + strand at 432.820 kb on - strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.858 kb on - strand at 433.039 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.090 kb on + strand, within SM_b20419 at 433.115 kb on + strand, within SM_b20419 at 433.132 kb on + strand, within SM_b20419 at 433.133 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.642 kb on + strand, within SM_b20419 at 433.643 kb on - strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.728 kb on - strand, within SM_b20419
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 431,119 + +2.1 431,120 - -0.9 431,120 - -1.3 431,189 - SM_b20417 0.12 -0.5 431,420 - SM_b20417 0.38 -0.6 431,420 - SM_b20417 0.38 -0.5 431,492 - SM_b20417 0.46 +1.1 431,492 - SM_b20417 0.46 -2.2 431,492 - SM_b20417 0.46 +0.6 431,493 + SM_b20417 0.46 +0.2 431,493 + SM_b20417 0.46 -0.9 431,749 + SM_b20417 0.76 -1.5 431,750 - SM_b20417 0.76 -1.6 431,750 - SM_b20417 0.76 -0.3 431,764 - SM_b20417 0.77 -0.7 431,828 - SM_b20417 0.84 -0.4 431,828 - SM_b20417 0.84 -3.3 431,836 + SM_b20417 0.85 -0.6 431,836 + SM_b20417 0.85 -1.2 431,836 + SM_b20417 0.85 -2.9 431,837 - SM_b20417 0.85 +0.8 431,837 - SM_b20417 0.85 -0.3 431,838 + SM_b20417 0.86 -2.2 431,838 + SM_b20417 0.86 +4.0 431,957 - +1.2 432,001 + +0.1 432,054 + +0.8 432,054 + +0.7 432,054 + -3.1 432,054 + -2.6 432,055 - -1.5 432,055 - +0.6 432,057 + -0.0 432,057 + -0.2 432,058 - SM_b20418 0.10 +1.9 432,060 - SM_b20418 0.10 -0.0 432,108 - SM_b20418 0.16 -2.7 432,145 - SM_b20418 0.20 -1.9 432,373 - SM_b20418 0.47 -1.7 432,373 - SM_b20418 0.47 -0.8 432,409 - SM_b20418 0.51 -2.9 432,409 - SM_b20418 0.51 -0.3 432,409 - SM_b20418 0.51 +0.7 432,572 + SM_b20418 0.71 -2.6 432,603 + SM_b20418 0.74 +0.9 432,604 - SM_b20418 0.74 -1.0 432,618 + SM_b20418 0.76 -0.8 432,619 - SM_b20418 0.76 +1.3 432,720 + SM_b20418 0.88 +2.9 432,720 + SM_b20418 0.88 -1.7 432,720 + SM_b20418 0.88 -2.2 432,721 - SM_b20418 0.88 -1.6 432,721 - SM_b20418 0.88 -0.3 432,819 + -0.1 432,820 - +0.2 432,857 + -4.0 432,857 + -0.5 432,857 + -0.5 432,858 - +0.3 433,039 + SM_b20419 0.21 -2.0 433,057 + SM_b20419 0.22 -1.2 433,057 + SM_b20419 0.22 +1.0 433,090 + SM_b20419 0.26 -0.8 433,115 + SM_b20419 0.28 -0.5 433,132 + SM_b20419 0.30 +0.8 433,133 - SM_b20419 0.30 -0.0 433,389 - SM_b20419 0.54 +1.7 433,389 - SM_b20419 0.54 +2.1 433,389 - SM_b20419 0.54 +1.4 433,389 - SM_b20419 0.54 +1.6 433,642 + SM_b20419 0.78 +2.7 433,643 - SM_b20419 0.78 -1.2 433,727 + SM_b20419 0.86 +0.1 433,727 + SM_b20419 0.86 +0.1 433,728 - SM_b20419 0.86 +1.4
Or see this region's nucleotide sequence