Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18605 and BPHYT_RS18610 are separated by 82 nucleotides BPHYT_RS18610 and BPHYT_RS18615 are separated by 77 nucleotides BPHYT_RS18615 and BPHYT_RS18620 are separated by 43 nucleotides
BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650
_RS18605
BPHYT_RS18610: BPHYT_RS18610 - lytic transglycosylase, at 4,185,733 to 4,187,700
_RS18610
BPHYT_RS18615: BPHYT_RS18615 - 5-formyltetrahydrofolate cyclo-ligase, at 4,187,778 to 4,188,320
_RS18615
BPHYT_RS18620: BPHYT_RS18620 - transcriptional regulator, at 4,188,364 to 4,188,876
_RS18620
Position (kb) 4185
4186
4187
4188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4184.758 kb on + strand at 4184.971 kb on + strand, within BPHYT_RS18605 at 4185.019 kb on + strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605 at 4185.086 kb on - strand, within BPHYT_RS18605 at 4185.265 kb on + strand, within BPHYT_RS18605 at 4185.265 kb on + strand, within BPHYT_RS18605 at 4185.266 kb on - strand, within BPHYT_RS18605 at 4185.266 kb on - strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand, within BPHYT_RS18605 at 4185.305 kb on + strand at 4185.306 kb on - strand, within BPHYT_RS18605 at 4185.306 kb on - strand, within BPHYT_RS18605 at 4185.539 kb on - strand, within BPHYT_RS18605 at 4185.608 kb on + strand at 4185.608 kb on + strand at 4185.627 kb on - strand at 4185.744 kb on + strand at 4185.801 kb on - strand at 4185.830 kb on + strand at 4185.831 kb on - strand at 4185.993 kb on - strand, within BPHYT_RS18610 at 4185.993 kb on - strand, within BPHYT_RS18610 at 4186.545 kb on - strand, within BPHYT_RS18610 at 4187.067 kb on - strand, within BPHYT_RS18610 at 4187.246 kb on + strand, within BPHYT_RS18610 at 4187.340 kb on - strand, within BPHYT_RS18610 at 4187.340 kb on - strand, within BPHYT_RS18610 at 4187.468 kb on + strand, within BPHYT_RS18610 at 4187.734 kb on + strand at 4187.735 kb on - strand at 4187.735 kb on - strand at 4187.735 kb on - strand at 4187.783 kb on - strand at 4187.889 kb on + strand, within BPHYT_RS18615 at 4188.156 kb on + strand, within BPHYT_RS18615 at 4188.159 kb on + strand, within BPHYT_RS18615 at 4188.220 kb on - strand, within BPHYT_RS18615 at 4188.220 kb on - strand, within BPHYT_RS18615 at 4188.248 kb on - strand, within BPHYT_RS18615 at 4188.330 kb on - strand at 4188.365 kb on + strand at 4188.367 kb on + strand at 4188.368 kb on - strand at 4188.578 kb on - strand, within BPHYT_RS18620 at 4188.578 kb on - strand, within BPHYT_RS18620 at 4188.582 kb on - strand, within BPHYT_RS18620 at 4188.588 kb on + strand, within BPHYT_RS18620 at 4188.592 kb on + strand, within BPHYT_RS18620 at 4188.612 kb on - strand, within BPHYT_RS18620
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,184,758 + +0.3 4,184,971 + BPHYT_RS18605 0.29 -0.6 4,185,019 + BPHYT_RS18605 0.34 -0.3 4,185,020 - BPHYT_RS18605 0.34 +0.7 4,185,020 - BPHYT_RS18605 0.34 +0.1 4,185,086 - BPHYT_RS18605 0.41 +0.0 4,185,265 + BPHYT_RS18605 0.60 +0.2 4,185,265 + BPHYT_RS18605 0.60 +0.1 4,185,266 - BPHYT_RS18605 0.60 -0.3 4,185,266 - BPHYT_RS18605 0.60 +0.4 4,185,305 + BPHYT_RS18605 0.64 -0.5 4,185,305 + BPHYT_RS18605 0.64 +0.3 4,185,305 + BPHYT_RS18605 0.64 -0.4 4,185,305 + BPHYT_RS18605 0.64 +0.4 4,185,305 + +1.3 4,185,306 - BPHYT_RS18605 0.64 +0.3 4,185,306 - BPHYT_RS18605 0.64 +1.7 4,185,539 - BPHYT_RS18605 0.88 +0.2 4,185,608 + -0.9 4,185,608 + +0.9 4,185,627 - +0.8 4,185,744 + -0.8 4,185,801 - -0.2 4,185,830 + +1.6 4,185,831 - +2.1 4,185,993 - BPHYT_RS18610 0.13 +2.3 4,185,993 - BPHYT_RS18610 0.13 +0.2 4,186,545 - BPHYT_RS18610 0.41 +2.2 4,187,067 - BPHYT_RS18610 0.68 +0.6 4,187,246 + BPHYT_RS18610 0.77 +2.6 4,187,340 - BPHYT_RS18610 0.82 -0.0 4,187,340 - BPHYT_RS18610 0.82 +2.4 4,187,468 + BPHYT_RS18610 0.88 +0.3 4,187,734 + -0.7 4,187,735 - -0.1 4,187,735 - -1.0 4,187,735 - -0.4 4,187,783 - -1.6 4,187,889 + BPHYT_RS18615 0.20 -0.9 4,188,156 + BPHYT_RS18615 0.70 -0.7 4,188,159 + BPHYT_RS18615 0.70 +0.9 4,188,220 - BPHYT_RS18615 0.81 -0.2 4,188,220 - BPHYT_RS18615 0.81 +0.1 4,188,248 - BPHYT_RS18615 0.87 +0.7 4,188,330 - +0.9 4,188,365 + -0.1 4,188,367 + +0.6 4,188,368 - +0.1 4,188,578 - BPHYT_RS18620 0.42 +0.5 4,188,578 - BPHYT_RS18620 0.42 +2.3 4,188,582 - BPHYT_RS18620 0.42 +0.2 4,188,588 + BPHYT_RS18620 0.44 -1.7 4,188,592 + BPHYT_RS18620 0.44 -1.9 4,188,612 - BPHYT_RS18620 0.48 +0.0
Or see this region's nucleotide sequence