Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15480

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,511,947	+				-0.0
3,511,948	-				+3.0
3,511,948	-				+0.1
3,512,802	-				-0.6
3,512,889	-				-0.4
3,512,889	-				-0.5
3,512,900	-				-0.1
3,512,915	-				-0.3
3,512,968	-		BPHYT_RS15480	0.18	-0.6
3,512,976	+		BPHYT_RS15480	0.19	-0.9
3,513,031	+		BPHYT_RS15480	0.28	+0.4
3,513,031	+		BPHYT_RS15480	0.28	+0.5
3,513,031	+		BPHYT_RS15480	0.28	+0.4
3,513,032	-		BPHYT_RS15480	0.28	+0.1
3,513,032	-		BPHYT_RS15480	0.28	+2.4
3,513,112	-		BPHYT_RS15480	0.42	-0.3
3,513,277	-		BPHYT_RS15480	0.70	+0.4
3,513,397	+		BPHYT_RS15480	0.90	-0.4
3,513,492	+				-0.3
3,513,493	-				+0.7
3,513,567	+				+1.8
3,513,567	+				-0.7
3,513,567	+				-4.0
3,513,812	-		BPHYT_RS15485	0.79	-0.4
3,513,938	+				+0.1
3,513,980	+				+0.3
3,514,173	-				-2.2
3,514,195	+				-1.0
3,514,195	+				-1.7
3,514,195	+				-2.3
3,514,195	+				-0.8
3,514,196	-				-0.8
3,514,196	-				-0.6
3,514,196	-				-0.2
3,514,251	+				-2.0
3,514,299	-		BPHYT_RS15490	0.12	-2.3