Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_18 and Pf6N2E2_19 are separated by 10 nucleotides Pf6N2E2_19 and Pf6N2E2_20 are separated by 0 nucleotides
Pf6N2E2_18 - Outer membrane pyoverdine eflux protein, at 51,075 to 52,469
_18
Pf6N2E2_19 - Pyoverdine efflux carrier and ATP binding protein, at 52,480 to 54,450
_19
Pf6N2E2_20 - pyoverdine-specific efflux macA-like protein, at 54,451 to 55,602
_20
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.734 kb on + strand, within Pf6N2E2_18 at 51.735 kb on - strand, within Pf6N2E2_18 at 51.937 kb on + strand, within Pf6N2E2_18 at 51.937 kb on + strand, within Pf6N2E2_18 at 51.938 kb on - strand, within Pf6N2E2_18 at 51.938 kb on - strand, within Pf6N2E2_18 at 51.938 kb on - strand, within Pf6N2E2_18 at 52.060 kb on + strand, within Pf6N2E2_18 at 52.060 kb on + strand, within Pf6N2E2_18 at 52.061 kb on - strand, within Pf6N2E2_18 at 52.084 kb on + strand, within Pf6N2E2_18 at 52.084 kb on + strand, within Pf6N2E2_18 at 52.085 kb on - strand, within Pf6N2E2_18 at 52.087 kb on + strand, within Pf6N2E2_18 at 52.088 kb on - strand, within Pf6N2E2_18 at 52.130 kb on - strand, within Pf6N2E2_18 at 53.012 kb on + strand, within Pf6N2E2_19 at 53.012 kb on + strand, within Pf6N2E2_19 at 53.058 kb on - strand, within Pf6N2E2_19 at 53.160 kb on - strand, within Pf6N2E2_19 at 53.261 kb on + strand, within Pf6N2E2_19 at 53.261 kb on + strand, within Pf6N2E2_19 at 53.262 kb on - strand, within Pf6N2E2_19 at 53.324 kb on + strand, within Pf6N2E2_19 at 53.325 kb on - strand, within Pf6N2E2_19 at 53.325 kb on - strand, within Pf6N2E2_19 at 53.325 kb on - strand, within Pf6N2E2_19 at 53.481 kb on - strand, within Pf6N2E2_19 at 54.107 kb on + strand, within Pf6N2E2_19 at 54.107 kb on + strand, within Pf6N2E2_19 at 54.161 kb on + strand, within Pf6N2E2_19 at 54.712 kb on + strand, within Pf6N2E2_20 at 54.712 kb on + strand, within Pf6N2E2_20 at 54.731 kb on + strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.732 kb on - strand, within Pf6N2E2_20 at 54.872 kb on + strand, within Pf6N2E2_20 at 54.873 kb on - strand, within Pf6N2E2_20 at 55.422 kb on - strand, within Pf6N2E2_20
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 51,734 + Pf6N2E2_18 0.47 -0.4 51,735 - Pf6N2E2_18 0.47 +0.8 51,937 + Pf6N2E2_18 0.62 -0.6 51,937 + Pf6N2E2_18 0.62 -0.7 51,938 - Pf6N2E2_18 0.62 -0.7 51,938 - Pf6N2E2_18 0.62 +2.4 51,938 - Pf6N2E2_18 0.62 +0.3 52,060 + Pf6N2E2_18 0.71 -0.7 52,060 + Pf6N2E2_18 0.71 +0.8 52,061 - Pf6N2E2_18 0.71 +0.5 52,084 + Pf6N2E2_18 0.72 +0.7 52,084 + Pf6N2E2_18 0.72 +0.5 52,085 - Pf6N2E2_18 0.72 +1.0 52,087 + Pf6N2E2_18 0.73 +0.0 52,088 - Pf6N2E2_18 0.73 +0.1 52,130 - Pf6N2E2_18 0.76 +0.7 53,012 + Pf6N2E2_19 0.27 +1.2 53,012 + Pf6N2E2_19 0.27 -0.2 53,058 - Pf6N2E2_19 0.29 +0.2 53,160 - Pf6N2E2_19 0.35 -0.9 53,261 + Pf6N2E2_19 0.40 +0.8 53,261 + Pf6N2E2_19 0.40 -1.7 53,262 - Pf6N2E2_19 0.40 -0.6 53,324 + Pf6N2E2_19 0.43 -0.8 53,325 - Pf6N2E2_19 0.43 -1.2 53,325 - Pf6N2E2_19 0.43 +0.5 53,325 - Pf6N2E2_19 0.43 +0.8 53,481 - Pf6N2E2_19 0.51 -0.8 54,107 + Pf6N2E2_19 0.83 -0.2 54,107 + Pf6N2E2_19 0.83 -1.0 54,161 + Pf6N2E2_19 0.85 -1.4 54,712 + Pf6N2E2_20 0.23 -0.4 54,712 + Pf6N2E2_20 0.23 -0.7 54,731 + Pf6N2E2_20 0.24 -0.3 54,732 - Pf6N2E2_20 0.24 -2.8 54,732 - Pf6N2E2_20 0.24 -0.2 54,732 - Pf6N2E2_20 0.24 -0.3 54,732 - Pf6N2E2_20 0.24 +0.8 54,872 + Pf6N2E2_20 0.37 +0.8 54,873 - Pf6N2E2_20 0.37 -0.4 55,422 - Pf6N2E2_20 0.84 -1.0
Or see this region's nucleotide sequence