Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21210 and HSERO_RS21215 are separated by 24 nucleotides HSERO_RS21215 and HSERO_RS21220 are separated by 68 nucleotides
HSERO_RS21210: HSERO_RS21210 - membrane protein, at 4,852,363 to 4,853,838
_RS21210
HSERO_RS21215: HSERO_RS21215 - hypothetical protein, at 4,853,863 to 4,854,468
_RS21215
HSERO_RS21220: HSERO_RS21220 - hypothetical protein, at 4,854,537 to 4,858,586
_RS21220
Position (kb) 4853
4854
4855 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4852.863 kb on + strand, within HSERO_RS21210 at 4852.982 kb on - strand, within HSERO_RS21210 at 4852.989 kb on + strand, within HSERO_RS21210 at 4852.997 kb on - strand, within HSERO_RS21210 at 4853.002 kb on - strand, within HSERO_RS21210 at 4853.058 kb on + strand, within HSERO_RS21210 at 4853.089 kb on + strand, within HSERO_RS21210 at 4853.120 kb on - strand, within HSERO_RS21210 at 4853.135 kb on - strand, within HSERO_RS21210 at 4853.156 kb on + strand, within HSERO_RS21210 at 4853.397 kb on + strand, within HSERO_RS21210 at 4853.405 kb on - strand, within HSERO_RS21210 at 4853.630 kb on - strand, within HSERO_RS21210 at 4853.663 kb on - strand, within HSERO_RS21210 at 4853.677 kb on + strand, within HSERO_RS21210 at 4853.684 kb on + strand, within HSERO_RS21210 at 4853.883 kb on - strand at 4853.926 kb on - strand, within HSERO_RS21215 at 4853.936 kb on - strand, within HSERO_RS21215 at 4854.056 kb on - strand, within HSERO_RS21215 at 4854.073 kb on - strand, within HSERO_RS21215 at 4854.140 kb on - strand, within HSERO_RS21215 at 4854.248 kb on + strand, within HSERO_RS21215 at 4854.252 kb on + strand, within HSERO_RS21215 at 4854.489 kb on - strand at 4854.512 kb on + strand at 4854.555 kb on - strand at 4854.686 kb on + strand at 4854.723 kb on - strand at 4854.765 kb on + strand at 4854.881 kb on + strand at 4855.095 kb on + strand, within HSERO_RS21220 at 4855.103 kb on - strand, within HSERO_RS21220 at 4855.121 kb on + strand, within HSERO_RS21220 at 4855.121 kb on + strand, within HSERO_RS21220 at 4855.129 kb on - strand, within HSERO_RS21220 at 4855.151 kb on + strand, within HSERO_RS21220 at 4855.164 kb on - strand, within HSERO_RS21220 at 4855.241 kb on - strand, within HSERO_RS21220 at 4855.262 kb on + strand, within HSERO_RS21220 at 4855.324 kb on + strand, within HSERO_RS21220 at 4855.374 kb on - strand, within HSERO_RS21220 at 4855.379 kb on + strand, within HSERO_RS21220 at 4855.387 kb on - strand, within HSERO_RS21220
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,852,863 + HSERO_RS21210 0.34 +0.4 4,852,982 - HSERO_RS21210 0.42 +0.7 4,852,989 + HSERO_RS21210 0.42 +0.2 4,852,997 - HSERO_RS21210 0.43 -0.2 4,853,002 - HSERO_RS21210 0.43 +0.4 4,853,058 + HSERO_RS21210 0.47 +0.8 4,853,089 + HSERO_RS21210 0.49 +0.4 4,853,120 - HSERO_RS21210 0.51 -0.4 4,853,135 - HSERO_RS21210 0.52 +0.5 4,853,156 + HSERO_RS21210 0.54 +0.8 4,853,397 + HSERO_RS21210 0.70 +0.9 4,853,405 - HSERO_RS21210 0.71 +0.9 4,853,630 - HSERO_RS21210 0.86 +0.3 4,853,663 - HSERO_RS21210 0.88 +4.5 4,853,677 + HSERO_RS21210 0.89 +0.9 4,853,684 + HSERO_RS21210 0.89 +0.4 4,853,883 - +0.1 4,853,926 - HSERO_RS21215 0.10 -0.1 4,853,936 - HSERO_RS21215 0.12 +0.8 4,854,056 - HSERO_RS21215 0.32 +0.2 4,854,073 - HSERO_RS21215 0.35 +0.5 4,854,140 - HSERO_RS21215 0.46 +1.6 4,854,248 + HSERO_RS21215 0.64 +3.0 4,854,252 + HSERO_RS21215 0.64 +1.2 4,854,489 - +0.4 4,854,512 + +1.6 4,854,555 - +0.4 4,854,686 + +0.3 4,854,723 - +1.4 4,854,765 + -0.6 4,854,881 + +3.0 4,855,095 + HSERO_RS21220 0.14 +0.2 4,855,103 - HSERO_RS21220 0.14 -1.1 4,855,121 + HSERO_RS21220 0.14 +0.6 4,855,121 + HSERO_RS21220 0.14 +1.8 4,855,129 - HSERO_RS21220 0.15 +0.4 4,855,151 + HSERO_RS21220 0.15 +0.7 4,855,164 - HSERO_RS21220 0.15 +0.9 4,855,241 - HSERO_RS21220 0.17 +1.2 4,855,262 + HSERO_RS21220 0.18 +0.2 4,855,324 + HSERO_RS21220 0.19 +2.9 4,855,374 - HSERO_RS21220 0.21 -0.0 4,855,379 + HSERO_RS21220 0.21 +1.6 4,855,387 - HSERO_RS21220 0.21 +0.6
Or see this region's nucleotide sequence