Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03685 and HSERO_RS03690 are separated by 97 nucleotides HSERO_RS03690 and HSERO_RS03695 are separated by 409 nucleotides
HSERO_RS03685: HSERO_RS03685 - type VI secretion protein, at 806,751 to 808,097
_RS03685
HSERO_RS03690: HSERO_RS03690 - membrane protein, at 808,195 to 808,818
_RS03690
HSERO_RS03695: HSERO_RS03695 - hypothetical protein, at 809,228 to 809,857
_RS03695
Position (kb) 808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 807.252 kb on - strand, within HSERO_RS03685 at 807.353 kb on - strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.402 kb on + strand, within HSERO_RS03685 at 807.548 kb on - strand, within HSERO_RS03685 at 807.565 kb on + strand, within HSERO_RS03685 at 807.581 kb on + strand, within HSERO_RS03685 at 807.651 kb on - strand at 807.851 kb on + strand, within HSERO_RS03685 at 807.905 kb on + strand, within HSERO_RS03685 at 807.913 kb on - strand at 807.913 kb on - strand, within HSERO_RS03685 at 807.920 kb on + strand, within HSERO_RS03685 at 807.922 kb on + strand, within HSERO_RS03685 at 808.069 kb on - strand at 808.278 kb on + strand, within HSERO_RS03690 at 808.300 kb on - strand, within HSERO_RS03690 at 808.457 kb on + strand, within HSERO_RS03690 at 808.466 kb on - strand, within HSERO_RS03690 at 808.482 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.490 kb on - strand, within HSERO_RS03690 at 808.495 kb on - strand, within HSERO_RS03690 at 808.500 kb on + strand, within HSERO_RS03690 at 808.558 kb on - strand, within HSERO_RS03690 at 808.607 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.638 kb on + strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.652 kb on + strand, within HSERO_RS03690 at 808.665 kb on - strand, within HSERO_RS03690 at 808.828 kb on + strand at 808.828 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.836 kb on - strand at 808.836 kb on - strand at 808.841 kb on - strand at 808.841 kb on - strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.869 kb on + strand at 808.871 kb on + strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.913 kb on - strand at 808.918 kb on + strand at 808.918 kb on - strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on - strand at 808.924 kb on - strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.931 kb on + strand at 808.931 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.935 kb on + strand at 808.938 kb on + strand at 808.939 kb on - strand at 808.943 kb on + strand at 808.943 kb on + strand at 808.961 kb on - strand at 808.966 kb on - strand at 809.023 kb on - strand at 809.099 kb on + strand at 809.115 kb on - strand at 809.119 kb on - strand at 809.122 kb on + strand at 809.122 kb on + strand at 809.130 kb on - strand at 809.130 kb on - strand at 809.136 kb on + strand at 809.146 kb on + strand at 809.147 kb on + strand at 809.154 kb on + strand at 809.155 kb on - strand at 809.155 kb on - strand at 809.157 kb on - strand at 809.164 kb on + strand at 809.172 kb on - strand at 809.216 kb on + strand at 809.218 kb on - strand at 809.224 kb on - strand at 809.241 kb on - strand at 809.241 kb on - strand at 809.252 kb on + strand at 809.252 kb on + strand at 809.260 kb on - strand at 809.265 kb on - strand at 809.267 kb on + strand at 809.275 kb on - strand at 809.296 kb on + strand, within HSERO_RS03695 at 809.308 kb on + strand, within HSERO_RS03695 at 809.332 kb on + strand, within HSERO_RS03695 at 809.341 kb on - strand, within HSERO_RS03695 at 809.341 kb on - strand, within HSERO_RS03695 at 809.365 kb on + strand, within HSERO_RS03695 at 809.373 kb on - strand, within HSERO_RS03695 at 809.476 kb on - strand, within HSERO_RS03695 at 809.662 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.760 kb on - strand, within HSERO_RS03695 at 809.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 807,252 - HSERO_RS03685 0.37 +0.6 807,353 - HSERO_RS03685 0.45 +1.0 807,402 + HSERO_RS03685 0.48 +0.1 807,402 + HSERO_RS03685 0.48 +1.1 807,548 - HSERO_RS03685 0.59 +0.8 807,565 + HSERO_RS03685 0.60 +0.2 807,581 + HSERO_RS03685 0.62 +0.9 807,651 - +3.0 807,851 + HSERO_RS03685 0.82 +0.9 807,905 + HSERO_RS03685 0.86 +0.8 807,913 - +1.1 807,913 - HSERO_RS03685 0.86 +1.0 807,920 + HSERO_RS03685 0.87 +0.7 807,922 + HSERO_RS03685 0.87 +0.8 808,069 - +1.1 808,278 + HSERO_RS03690 0.13 +0.9 808,300 - HSERO_RS03690 0.17 +0.4 808,457 + HSERO_RS03690 0.42 +1.1 808,466 - HSERO_RS03690 0.43 +1.3 808,482 + HSERO_RS03690 0.46 +1.1 808,487 + HSERO_RS03690 0.47 +1.0 808,487 + HSERO_RS03690 0.47 +4.4 808,490 - HSERO_RS03690 0.47 -0.3 808,495 - HSERO_RS03690 0.48 -0.0 808,500 + HSERO_RS03690 0.49 +1.3 808,558 - HSERO_RS03690 0.58 +0.1 808,607 - HSERO_RS03690 0.66 +0.4 808,618 - HSERO_RS03690 0.68 +0.3 808,618 - HSERO_RS03690 0.68 +1.4 808,623 + HSERO_RS03690 0.69 +0.6 808,623 + HSERO_RS03690 0.69 +1.1 808,631 - HSERO_RS03690 0.70 +0.3 808,631 - HSERO_RS03690 0.70 +0.0 808,631 - HSERO_RS03690 0.70 +0.8 808,638 + HSERO_RS03690 0.71 +1.3 808,650 - HSERO_RS03690 0.73 +1.1 808,650 - HSERO_RS03690 0.73 +0.2 808,652 + HSERO_RS03690 0.73 +1.7 808,665 - HSERO_RS03690 0.75 +0.6 808,828 + +1.0 808,828 + +0.8 808,833 + +0.5 808,833 + +0.9 808,833 + +1.0 808,833 + +1.3 808,833 + +1.4 808,833 + +0.8 808,836 - +1.1 808,836 - -0.2 808,841 - -0.7 808,841 - +0.8 808,861 + +1.1 808,861 + +1.8 808,861 + +0.6 808,861 + +0.2 808,861 + +0.2 808,861 + +0.7 808,869 + +1.9 808,871 + +0.1 808,873 - +0.9 808,873 - +0.9 808,873 - +1.1 808,913 - +1.6 808,918 + +0.6 808,918 - +0.8 808,921 + +1.5 808,921 + +1.6 808,921 + +2.3 808,921 + +0.6 808,921 + +1.6 808,921 + +1.5 808,921 + +1.1 808,921 + +0.8 808,921 + +0.9 808,921 - +0.4 808,924 - +5.5 808,926 + +0.4 808,926 + +0.5 808,926 + +1.3 808,926 + +0.8 808,926 + +1.1 808,926 - -0.7 808,929 - +1.3 808,929 - +1.0 808,929 - -0.0 808,929 - -0.1 808,929 - +0.7 808,929 - +1.1 808,929 - +1.2 808,931 + +1.2 808,931 - +0.2 808,934 - +0.1 808,934 - +0.6 808,934 - +0.6 808,934 - +0.0 808,935 + +0.9 808,938 + +1.0 808,939 - -0.3 808,943 + +3.1 808,943 + +0.9 808,961 - -1.9 808,966 - -0.0 809,023 - +0.3 809,099 + +1.2 809,115 - +1.3 809,119 - -0.6 809,122 + +0.2 809,122 + +1.3 809,130 - +1.2 809,130 - +1.2 809,136 + +0.8 809,146 + +0.2 809,147 + +0.8 809,154 + +0.6 809,155 - +0.7 809,155 - -0.5 809,157 - +0.3 809,164 + +1.4 809,172 - +0.4 809,216 + +1.7 809,218 - +0.8 809,224 - +1.4 809,241 - +0.3 809,241 - -1.2 809,252 + +1.1 809,252 + +0.5 809,260 - -0.3 809,265 - +0.4 809,267 + +0.9 809,275 - +0.3 809,296 + HSERO_RS03695 0.11 +0.9 809,308 + HSERO_RS03695 0.13 +1.4 809,332 + HSERO_RS03695 0.17 +1.6 809,341 - HSERO_RS03695 0.18 +0.8 809,341 - HSERO_RS03695 0.18 +0.8 809,365 + HSERO_RS03695 0.22 +0.3 809,373 - HSERO_RS03695 0.23 +0.6 809,476 - HSERO_RS03695 0.39 -0.6 809,662 - HSERO_RS03695 0.69 +0.1 809,745 - HSERO_RS03695 0.82 +0.6 809,745 - HSERO_RS03695 0.82 +0.6 809,760 - HSERO_RS03695 0.84 +1.6 809,795 + +1.4
Or see this region's nucleotide sequence