Experiment: Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_778 and Pf6N2E2_779 overlap by 7 nucleotides Pf6N2E2_779 and Pf6N2E2_780 are separated by 342 nucleotides
Pf6N2E2_778 - Probable lipoprotein signal peptide, at 887,553 to 888,698
_778
Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885
_779
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 887.817 kb on + strand, within Pf6N2E2_778 at 887.817 kb on + strand, within Pf6N2E2_778 at 887.911 kb on + strand, within Pf6N2E2_778 at 888.063 kb on + strand, within Pf6N2E2_778 at 888.163 kb on - strand, within Pf6N2E2_778 at 888.270 kb on - strand, within Pf6N2E2_778 at 888.377 kb on + strand, within Pf6N2E2_778 at 888.378 kb on - strand, within Pf6N2E2_778 at 888.412 kb on - strand, within Pf6N2E2_778 at 888.697 kb on - strand at 888.709 kb on + strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.859 kb on - strand, within Pf6N2E2_779 at 888.928 kb on - strand, within Pf6N2E2_779 at 889.086 kb on - strand, within Pf6N2E2_779 at 889.158 kb on + strand, within Pf6N2E2_779 at 889.159 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.818 kb on + strand at 889.959 kb on + strand at 889.998 kb on + strand at 890.055 kb on + strand at 890.093 kb on - strand at 890.126 kb on - strand at 890.126 kb on - strand at 890.269 kb on + strand at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.501 kb on + strand, within Pf6N2E2_780 at 890.502 kb on - strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.622 kb on - strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.694 kb on - strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.726 kb on - strand, within Pf6N2E2_780 at 890.758 kb on + strand, within Pf6N2E2_780 at 890.793 kb on - strand, within Pf6N2E2_780 at 890.875 kb on + strand, within Pf6N2E2_780
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM remove 887,817 + Pf6N2E2_778 0.23 -0.4 887,817 + Pf6N2E2_778 0.23 +1.0 887,911 + Pf6N2E2_778 0.31 +0.2 888,063 + Pf6N2E2_778 0.45 -1.7 888,163 - Pf6N2E2_778 0.53 +0.6 888,270 - Pf6N2E2_778 0.63 -0.1 888,377 + Pf6N2E2_778 0.72 -1.0 888,378 - Pf6N2E2_778 0.72 +1.9 888,412 - Pf6N2E2_778 0.75 -0.1 888,697 - -0.1 888,709 + +0.6 888,710 - +0.6 888,710 - -1.4 888,710 - -0.1 888,710 - -1.3 888,859 - Pf6N2E2_779 0.14 +0.6 888,928 - Pf6N2E2_779 0.20 -0.4 889,086 - Pf6N2E2_779 0.33 -1.5 889,158 + Pf6N2E2_779 0.39 -1.4 889,159 - Pf6N2E2_779 0.39 -1.1 889,414 - Pf6N2E2_779 0.60 -1.1 889,414 - Pf6N2E2_779 0.60 -1.0 889,764 + Pf6N2E2_779 0.90 +0.6 889,764 + Pf6N2E2_779 0.90 -0.4 889,818 + -1.0 889,959 + -0.4 889,998 + +0.3 890,055 + -0.1 890,093 - +0.2 890,126 - +0.4 890,126 - +0.6 890,269 + +1.6 890,459 + Pf6N2E2_780 0.12 +0.6 890,459 + Pf6N2E2_780 0.12 +0.9 890,459 + Pf6N2E2_780 0.12 -1.0 890,460 - Pf6N2E2_780 0.12 +0.0 890,460 - Pf6N2E2_780 0.12 +0.6 890,460 - Pf6N2E2_780 0.12 -0.4 890,501 + Pf6N2E2_780 0.14 -0.4 890,502 - Pf6N2E2_780 0.14 +2.2 890,608 + Pf6N2E2_780 0.19 +1.6 890,608 + Pf6N2E2_780 0.19 -0.4 890,622 - Pf6N2E2_780 0.20 -0.4 890,693 + Pf6N2E2_780 0.23 +0.0 890,693 + Pf6N2E2_780 0.23 +1.2 890,693 + Pf6N2E2_780 0.23 +0.8 890,693 + Pf6N2E2_780 0.23 +1.4 890,693 + Pf6N2E2_780 0.23 -1.4 890,694 - Pf6N2E2_780 0.23 +0.6 890,725 + Pf6N2E2_780 0.25 +0.4 890,725 + Pf6N2E2_780 0.25 +0.4 890,725 + Pf6N2E2_780 0.25 +0.6 890,726 - Pf6N2E2_780 0.25 -0.2 890,758 + Pf6N2E2_780 0.27 -2.3 890,793 - Pf6N2E2_780 0.28 -0.6 890,875 + Pf6N2E2_780 0.32 +1.6
Or see this region's nucleotide sequence