Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1573 and Pf6N2E2_1574 are separated by 3 nucleotides Pf6N2E2_1574 and Pf6N2E2_1575 are separated by 32 nucleotides
Pf6N2E2_1573 - Cytochrome c family protein, at 1,837,448 to 1,838,752
_1573
Pf6N2E2_1574 - hypothetical protein, at 1,838,756 to 1,840,564
_1574
Pf6N2E2_1575 - FIG00967398: hypothetical protein, at 1,840,597 to 1,841,652
_1575
Position (kb)
1838
1839
1840
1841 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1837.913 kb on + strand, within Pf6N2E2_1573 at 1837.914 kb on - strand, within Pf6N2E2_1573 at 1837.914 kb on - strand, within Pf6N2E2_1573 at 1837.917 kb on - strand, within Pf6N2E2_1573 at 1837.917 kb on - strand, within Pf6N2E2_1573 at 1837.943 kb on + strand, within Pf6N2E2_1573 at 1837.949 kb on + strand, within Pf6N2E2_1573 at 1837.949 kb on + strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.950 kb on - strand, within Pf6N2E2_1573 at 1837.970 kb on + strand, within Pf6N2E2_1573 at 1837.970 kb on + strand, within Pf6N2E2_1573 at 1837.971 kb on - strand, within Pf6N2E2_1573 at 1837.971 kb on - strand, within Pf6N2E2_1573 at 1837.971 kb on - strand, within Pf6N2E2_1573 at 1838.079 kb on - strand, within Pf6N2E2_1573 at 1838.262 kb on + strand, within Pf6N2E2_1573 at 1838.262 kb on + strand, within Pf6N2E2_1573 at 1838.262 kb on + strand, within Pf6N2E2_1573 at 1838.262 kb on + strand, within Pf6N2E2_1573 at 1838.262 kb on + strand, within Pf6N2E2_1573 at 1838.263 kb on - strand, within Pf6N2E2_1573 at 1838.263 kb on - strand, within Pf6N2E2_1573 at 1838.263 kb on - strand, within Pf6N2E2_1573 at 1838.294 kb on + strand, within Pf6N2E2_1573 at 1838.294 kb on + strand, within Pf6N2E2_1573 at 1838.295 kb on - strand, within Pf6N2E2_1573 at 1838.300 kb on + strand, within Pf6N2E2_1573 at 1838.301 kb on - strand, within Pf6N2E2_1573 at 1838.301 kb on - strand, within Pf6N2E2_1573 at 1838.430 kb on - strand, within Pf6N2E2_1573 at 1838.511 kb on - strand, within Pf6N2E2_1573 at 1838.511 kb on - strand, within Pf6N2E2_1573 at 1838.511 kb on - strand, within Pf6N2E2_1573 at 1838.514 kb on - strand, within Pf6N2E2_1573 at 1838.616 kb on - strand, within Pf6N2E2_1573 at 1838.616 kb on - strand, within Pf6N2E2_1573 at 1838.697 kb on - strand at 1838.697 kb on - strand at 1838.697 kb on - strand at 1838.697 kb on - strand at 1838.751 kb on - strand at 1838.751 kb on - strand at 1838.912 kb on + strand at 1838.960 kb on + strand, within Pf6N2E2_1574 at 1838.960 kb on + strand, within Pf6N2E2_1574 at 1838.960 kb on + strand, within Pf6N2E2_1574 at 1838.960 kb on + strand, within Pf6N2E2_1574 at 1838.961 kb on - strand, within Pf6N2E2_1574 at 1838.961 kb on - strand, within Pf6N2E2_1574 at 1838.961 kb on - strand, within Pf6N2E2_1574 at 1838.963 kb on + strand, within Pf6N2E2_1574 at 1838.963 kb on + strand, within Pf6N2E2_1574 at 1838.988 kb on - strand, within Pf6N2E2_1574 at 1839.086 kb on + strand, within Pf6N2E2_1574 at 1839.611 kb on - strand, within Pf6N2E2_1574 at 1839.743 kb on + strand, within Pf6N2E2_1574 at 1839.818 kb on + strand, within Pf6N2E2_1574 at 1839.819 kb on - strand, within Pf6N2E2_1574 at 1839.821 kb on + strand, within Pf6N2E2_1574 at 1839.821 kb on + strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.822 kb on - strand, within Pf6N2E2_1574 at 1839.827 kb on + strand, within Pf6N2E2_1574 at 1839.827 kb on + strand, within Pf6N2E2_1574 at 1839.828 kb on - strand, within Pf6N2E2_1574 at 1839.877 kb on - strand, within Pf6N2E2_1574 at 1839.959 kb on + strand, within Pf6N2E2_1574 at 1839.959 kb on + strand, within Pf6N2E2_1574 at 1840.091 kb on + strand, within Pf6N2E2_1574 at 1840.092 kb on - strand, within Pf6N2E2_1574 at 1840.092 kb on - strand, within Pf6N2E2_1574 at 1840.106 kb on + strand, within Pf6N2E2_1574 at 1840.107 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.257 kb on - strand, within Pf6N2E2_1574 at 1840.277 kb on + strand, within Pf6N2E2_1574 at 1840.277 kb on + strand, within Pf6N2E2_1574 at 1840.335 kb on - strand, within Pf6N2E2_1574 at 1840.386 kb on - strand at 1840.387 kb on + strand at 1840.388 kb on - strand at 1840.457 kb on + strand at 1840.457 kb on + strand at 1840.568 kb on + strand at 1840.765 kb on - strand, within Pf6N2E2_1575 at 1840.765 kb on - strand, within Pf6N2E2_1575 at 1840.936 kb on + strand at 1840.936 kb on + strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1840.937 kb on - strand, within Pf6N2E2_1575 at 1841.023 kb on + strand, within Pf6N2E2_1575 at 1841.065 kb on - strand, within Pf6N2E2_1575 at 1841.065 kb on - strand, within Pf6N2E2_1575 at 1841.167 kb on + strand, within Pf6N2E2_1575 at 1841.168 kb on - strand, within Pf6N2E2_1575
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 1,837,913 + Pf6N2E2_1573 0.36 +2.4 1,837,914 - Pf6N2E2_1573 0.36 -0.2 1,837,914 - Pf6N2E2_1573 0.36 -0.1 1,837,917 - Pf6N2E2_1573 0.36 +1.4 1,837,917 - Pf6N2E2_1573 0.36 -0.8 1,837,943 + Pf6N2E2_1573 0.38 +0.2 1,837,949 + Pf6N2E2_1573 0.38 +0.5 1,837,949 + Pf6N2E2_1573 0.38 +0.2 1,837,950 - Pf6N2E2_1573 0.38 -0.6 1,837,950 - Pf6N2E2_1573 0.38 +0.8 1,837,950 - Pf6N2E2_1573 0.38 +0.4 1,837,950 - Pf6N2E2_1573 0.38 -0.1 1,837,950 - Pf6N2E2_1573 0.38 +0.4 1,837,950 - Pf6N2E2_1573 0.38 -0.5 1,837,970 + Pf6N2E2_1573 0.40 -0.4 1,837,970 + Pf6N2E2_1573 0.40 +1.5 1,837,971 - Pf6N2E2_1573 0.40 +0.4 1,837,971 - Pf6N2E2_1573 0.40 -3.1 1,837,971 - Pf6N2E2_1573 0.40 -0.5 1,838,079 - Pf6N2E2_1573 0.48 -0.2 1,838,262 + Pf6N2E2_1573 0.62 -0.1 1,838,262 + Pf6N2E2_1573 0.62 +0.4 1,838,262 + Pf6N2E2_1573 0.62 +0.8 1,838,262 + Pf6N2E2_1573 0.62 +0.8 1,838,262 + Pf6N2E2_1573 0.62 -1.8 1,838,263 - Pf6N2E2_1573 0.62 -0.0 1,838,263 - Pf6N2E2_1573 0.62 -1.8 1,838,263 - Pf6N2E2_1573 0.62 +0.2 1,838,294 + Pf6N2E2_1573 0.65 -0.4 1,838,294 + Pf6N2E2_1573 0.65 -0.5 1,838,295 - Pf6N2E2_1573 0.65 -0.0 1,838,300 + Pf6N2E2_1573 0.65 -0.2 1,838,301 - Pf6N2E2_1573 0.65 +0.6 1,838,301 - Pf6N2E2_1573 0.65 -0.8 1,838,430 - Pf6N2E2_1573 0.75 -1.7 1,838,511 - Pf6N2E2_1573 0.81 +1.3 1,838,511 - Pf6N2E2_1573 0.81 -2.0 1,838,511 - Pf6N2E2_1573 0.81 -0.3 1,838,514 - Pf6N2E2_1573 0.82 -2.4 1,838,616 - Pf6N2E2_1573 0.90 +0.3 1,838,616 - Pf6N2E2_1573 0.90 +1.6 1,838,697 - -1.4 1,838,697 - -0.5 1,838,697 - -3.2 1,838,697 - -0.0 1,838,751 - -0.8 1,838,751 - +1.1 1,838,912 + -2.2 1,838,960 + Pf6N2E2_1574 0.11 +1.2 1,838,960 + Pf6N2E2_1574 0.11 -0.2 1,838,960 + Pf6N2E2_1574 0.11 +0.4 1,838,960 + Pf6N2E2_1574 0.11 +0.8 1,838,961 - Pf6N2E2_1574 0.11 +1.2 1,838,961 - Pf6N2E2_1574 0.11 -1.5 1,838,961 - Pf6N2E2_1574 0.11 +0.1 1,838,963 + Pf6N2E2_1574 0.11 -0.3 1,838,963 + Pf6N2E2_1574 0.11 +0.2 1,838,988 - Pf6N2E2_1574 0.13 +0.8 1,839,086 + Pf6N2E2_1574 0.18 +0.8 1,839,611 - Pf6N2E2_1574 0.47 -1.5 1,839,743 + Pf6N2E2_1574 0.55 -0.0 1,839,818 + Pf6N2E2_1574 0.59 -0.0 1,839,819 - Pf6N2E2_1574 0.59 +0.5 1,839,821 + Pf6N2E2_1574 0.59 +0.8 1,839,821 + Pf6N2E2_1574 0.59 +1.1 1,839,822 - Pf6N2E2_1574 0.59 +1.5 1,839,822 - Pf6N2E2_1574 0.59 +0.1 1,839,822 - Pf6N2E2_1574 0.59 -0.8 1,839,827 + Pf6N2E2_1574 0.59 -0.5 1,839,827 + Pf6N2E2_1574 0.59 +0.4 1,839,828 - Pf6N2E2_1574 0.59 -0.3 1,839,877 - Pf6N2E2_1574 0.62 +0.6 1,839,959 + Pf6N2E2_1574 0.67 +0.8 1,839,959 + Pf6N2E2_1574 0.67 +1.4 1,840,091 + Pf6N2E2_1574 0.74 +2.4 1,840,092 - Pf6N2E2_1574 0.74 +0.4 1,840,092 - Pf6N2E2_1574 0.74 +0.8 1,840,106 + Pf6N2E2_1574 0.75 +0.8 1,840,107 - Pf6N2E2_1574 0.75 +2.4 1,840,257 - Pf6N2E2_1574 0.83 +1.3 1,840,257 - Pf6N2E2_1574 0.83 +1.5 1,840,257 - Pf6N2E2_1574 0.83 -1.3 1,840,277 + Pf6N2E2_1574 0.84 -0.0 1,840,277 + Pf6N2E2_1574 0.84 -0.2 1,840,335 - Pf6N2E2_1574 0.87 +0.4 1,840,386 - +0.8 1,840,387 + +1.8 1,840,388 - +2.4 1,840,457 + +0.8 1,840,457 + +0.8 1,840,568 + +0.4 1,840,765 - Pf6N2E2_1575 0.16 -1.2 1,840,765 - Pf6N2E2_1575 0.16 -0.8 1,840,936 + +3.1 1,840,936 + Pf6N2E2_1575 0.32 +0.2 1,840,937 - Pf6N2E2_1575 0.32 +0.5 1,840,937 - Pf6N2E2_1575 0.32 -0.2 1,840,937 - Pf6N2E2_1575 0.32 +1.8 1,840,937 - Pf6N2E2_1575 0.32 -1.8 1,841,023 + Pf6N2E2_1575 0.40 -0.6 1,841,065 - Pf6N2E2_1575 0.44 +1.8 1,841,065 - Pf6N2E2_1575 0.44 +0.8 1,841,167 + Pf6N2E2_1575 0.54 +0.4 1,841,168 - Pf6N2E2_1575 0.54 -0.0
Or see this region's nucleotide sequence