Experiment: Wcs_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10835 and PS417_10840 are separated by 19 nucleotides PS417_10840 and PS417_10845 overlap by 12 nucleotides PS417_10845 and PS417_10850 are separated by 219 nucleotides
PS417_10835: PS417_10835 - major facilitator transporter, at 2,316,452 to 2,317,768
_10835
PS417_10840: PS417_10840 - amidase, at 2,317,788 to 2,318,561
_10840
PS417_10845: PS417_10845 - hypothetical protein, at 2,318,550 to 2,318,858
_10845
PS417_10850: PS417_10850 - histidine kinase, at 2,319,078 to 2,320,139
_10850
Position (kb)
2318
2319 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2317.583 kb on - strand, within PS417_10835 at 2317.583 kb on - strand, within PS417_10835 at 2317.752 kb on - strand at 2317.752 kb on - strand at 2317.795 kb on + strand at 2317.796 kb on - strand at 2317.797 kb on + strand at 2317.797 kb on + strand at 2317.798 kb on - strand at 2317.981 kb on + strand, within PS417_10840 at 2317.981 kb on + strand, within PS417_10840 at 2318.209 kb on + strand, within PS417_10840 at 2318.494 kb on + strand at 2318.989 kb on + strand at 2318.990 kb on - strand at 2318.990 kb on - strand at 2319.744 kb on - strand, within PS417_10850
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_1 remove 2,317,583 - PS417_10835 0.86 -0.4 2,317,583 - PS417_10835 0.86 -0.3 2,317,752 - +0.1 2,317,752 - +1.5 2,317,795 + +0.2 2,317,796 - -0.8 2,317,797 + +1.3 2,317,797 + -2.9 2,317,798 - -0.4 2,317,981 + PS417_10840 0.25 +0.0 2,317,981 + PS417_10840 0.25 +0.6 2,318,209 + PS417_10840 0.54 +1.8 2,318,494 + -1.2 2,318,989 + +1.9 2,318,990 - -1.4 2,318,990 - -2.7 2,319,744 - PS417_10850 0.63 +0.6
Or see this region's nucleotide sequence