Strain Fitness in Pseudomonas putida KT2440 around PP_3265

Experiment: Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM
3,698,837	+		PP_3264	0.31	+1.3
3,698,838	-		PP_3264	0.31	+0.6
3,698,870	+		PP_3264	0.33	+0.5
3,698,871	-				+0.9
3,698,871	-		PP_3264	0.33	+0.7
3,698,876	+		PP_3264	0.34	+1.2
3,698,877	-		PP_3264	0.34	-0.2
3,699,053	+		PP_3264	0.48	+0.9
3,699,053	+		PP_3264	0.48	-0.6
3,699,054	-		PP_3264	0.49	-0.5
3,699,054	-		PP_3264	0.49	-0.2
3,699,234	-		PP_3264	0.64	+0.9
3,699,266	-		PP_3264	0.66	+0.2
3,699,282	-		PP_3264	0.67	-0.2
3,699,569	-				+1.5
3,699,569	-				-0.4
3,699,614	+				+0.4
3,699,615	-				+0.3
3,699,615	-				-0.0
3,699,615	-				+1.0
3,699,615	-				+0.8
3,699,696	+				-0.5
3,699,697	-				-0.0
3,699,725	-				+0.6
3,699,769	+		PP_3265	0.13	-0.2
3,699,770	-		PP_3265	0.13	-0.1
3,699,997	-		PP_3265	0.42	-0.6
3,700,163	-		PP_3265	0.64	-1.0
3,700,201	+		PP_3265	0.69	-0.9
3,700,525	-				-0.6
3,700,564	-		PP_3266	0.12	+0.6
3,700,564	-		PP_3266	0.12	+0.4
3,700,651	+		PP_3266	0.20	-0.5
3,700,685	-		PP_3266	0.23	-0.0
3,700,686	+		PP_3266	0.23	+0.7
3,700,699	-		PP_3266	0.25	+2.2
3,700,699	-		PP_3266	0.25	-0.3
3,700,699	-		PP_3266	0.25	-0.1
3,700,707	-		PP_3266	0.25	+3.3
3,700,707	-		PP_3266	0.25	+1.5
3,700,707	-		PP_3266	0.25	-1.0
3,700,729	-		PP_3266	0.28	-0.6
3,700,744	+		PP_3266	0.29	+0.6
3,700,758	+		PP_3266	0.30	+0.6
3,700,758	+		PP_3266	0.30	+0.5
3,700,759	-		PP_3266	0.30	-0.3
3,700,759	-		PP_3266	0.30	-1.7
3,700,811	+		PP_3266	0.35	-0.1
3,701,128	+		PP_3266	0.65	-0.6
3,701,130	+		PP_3266	0.66	-0.1
3,701,130	+		PP_3266	0.66	+1.3
3,701,131	-		PP_3266	0.66	-0.5
3,701,131	-		PP_3266	0.66	+0.3
3,701,131	-		PP_3266	0.66	+0.4
3,701,190	+		PP_3266	0.71	+1.4
3,701,335	+		PP_3266	0.85	+0.5
3,701,336	-		PP_3266	0.85	-0.3