Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27445 and BWI76_RS27450 are separated by 95 nucleotides BWI76_RS27450 and BWI76_RS27455 are separated by 0 nucleotides BWI76_RS27455 and BWI76_RS27460 are separated by 112 nucleotides
BWI76_RS27445: BWI76_RS27445 - fructose-bisphosphatase class II, at 5,694,899 to 5,695,909
_RS27445
BWI76_RS27450: BWI76_RS27450 - ferredoxin--NADP(+) reductase, at 5,696,005 to 5,696,751
_RS27450
BWI76_RS27455: BWI76_RS27455 - DUF805 domain-containing protein, at 5,696,752 to 5,697,180
_RS27455
BWI76_RS27460: BWI76_RS27460 - hypothetical protein, at 5,697,293 to 5,697,892
_RS27460
Position (kb) 5696
5697 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5695.104 kb on - strand, within BWI76_RS27445 at 5695.475 kb on + strand, within BWI76_RS27445 at 5695.553 kb on + strand, within BWI76_RS27445 at 5695.771 kb on + strand, within BWI76_RS27445 at 5695.880 kb on + strand at 5696.061 kb on + strand at 5696.392 kb on + strand, within BWI76_RS27450 at 5696.400 kb on - strand, within BWI76_RS27450 at 5696.429 kb on - strand, within BWI76_RS27450 at 5696.497 kb on - strand, within BWI76_RS27450 at 5696.627 kb on + strand, within BWI76_RS27450 at 5696.637 kb on - strand, within BWI76_RS27450 at 5696.864 kb on + strand, within BWI76_RS27455 at 5696.942 kb on + strand, within BWI76_RS27455 at 5697.030 kb on + strand, within BWI76_RS27455 at 5697.168 kb on + strand at 5697.168 kb on + strand at 5697.176 kb on - strand at 5697.176 kb on - strand at 5697.181 kb on + strand at 5697.360 kb on - strand, within BWI76_RS27460 at 5697.457 kb on + strand, within BWI76_RS27460 at 5697.518 kb on + strand, within BWI76_RS27460 at 5697.518 kb on + strand, within BWI76_RS27460 at 5697.659 kb on + strand, within BWI76_RS27460 at 5697.673 kb on - strand, within BWI76_RS27460
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 5,695,104 - BWI76_RS27445 0.20 +0.1 5,695,475 + BWI76_RS27445 0.57 -0.6 5,695,553 + BWI76_RS27445 0.65 +0.3 5,695,771 + BWI76_RS27445 0.86 +0.3 5,695,880 + +0.2 5,696,061 + -2.1 5,696,392 + BWI76_RS27450 0.52 +0.9 5,696,400 - BWI76_RS27450 0.53 -1.9 5,696,429 - BWI76_RS27450 0.57 -2.0 5,696,497 - BWI76_RS27450 0.66 -2.1 5,696,627 + BWI76_RS27450 0.83 -2.9 5,696,637 - BWI76_RS27450 0.85 -1.2 5,696,864 + BWI76_RS27455 0.26 +1.2 5,696,942 + BWI76_RS27455 0.44 -1.4 5,697,030 + BWI76_RS27455 0.65 +1.3 5,697,168 + -1.7 5,697,168 + -2.1 5,697,176 - -0.7 5,697,176 - -1.1 5,697,181 + -3.0 5,697,360 - BWI76_RS27460 0.11 +1.2 5,697,457 + BWI76_RS27460 0.27 -0.1 5,697,518 + BWI76_RS27460 0.38 +0.6 5,697,518 + BWI76_RS27460 0.38 -0.2 5,697,659 + BWI76_RS27460 0.61 -2.1 5,697,673 - BWI76_RS27460 0.63 -0.9
Or see this region's nucleotide sequence