Experiment: Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02780 and BWI76_RS02785 are separated by 2 nucleotides BWI76_RS02785 and BWI76_RS02790 are separated by 156 nucleotides BWI76_RS02790 and BWI76_RS02795 are separated by 403 nucleotides
BWI76_RS02780: BWI76_RS02780 - translocation and assembly module TamB, at 564,944 to 568,720
_RS02780
BWI76_RS02785: BWI76_RS02785 - AIG2 family protein, at 568,723 to 569,067
_RS02785
BWI76_RS02790: BWI76_RS02790 - inorganic pyrophosphatase, at 569,224 to 569,751
_RS02790
BWI76_RS02795: BWI76_RS02795 - periplasmic binding protein/LacI transcriptional regulator, at 570,155 to 571,111
_RS02795
Position (kb) 569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 568.372 kb on + strand at 568.379 kb on - strand at 568.394 kb on + strand at 568.475 kb on - strand at 568.530 kb on + strand at 568.550 kb on + strand at 568.571 kb on - strand at 568.622 kb on + strand at 568.685 kb on - strand at 568.745 kb on + strand at 568.980 kb on - strand, within BWI76_RS02785 at 569.011 kb on + strand, within BWI76_RS02785 at 569.019 kb on - strand, within BWI76_RS02785 at 569.798 kb on - strand at 569.849 kb on - strand at 570.020 kb on + strand at 570.096 kb on + strand at 570.145 kb on - strand at 570.208 kb on + strand at 570.322 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.536 kb on - strand, within BWI76_RS02795 at 570.577 kb on + strand, within BWI76_RS02795 at 570.619 kb on + strand, within BWI76_RS02795 at 570.747 kb on - strand, within BWI76_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL remove 568,372 + -0.5 568,379 - -0.7 568,394 + -2.0 568,475 - -0.3 568,530 + -1.3 568,550 + -3.3 568,571 - -1.7 568,622 + -2.5 568,685 - -2.3 568,745 + -2.0 568,980 - BWI76_RS02785 0.74 +0.6 569,011 + BWI76_RS02785 0.83 +0.2 569,019 - BWI76_RS02785 0.86 -0.7 569,798 - -0.7 569,849 - +0.5 570,020 + -2.3 570,096 + -0.7 570,145 - -2.7 570,208 + -0.3 570,322 + BWI76_RS02795 0.17 -0.6 570,440 + BWI76_RS02795 0.30 +0.8 570,440 + BWI76_RS02795 0.30 -0.2 570,536 - BWI76_RS02795 0.40 +0.2 570,577 + BWI76_RS02795 0.44 -0.5 570,619 + BWI76_RS02795 0.48 -2.1 570,747 - BWI76_RS02795 0.62 -0.2
Or see this region's nucleotide sequence