Experiment: Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21675 and BWI76_RS21680 are separated by 22 nucleotides BWI76_RS21680 and BWI76_RS21685 are separated by 49 nucleotides BWI76_RS21685 and BWI76_RS21690 are separated by 79 nucleotides BWI76_RS21690 and BWI76_RS21695 are separated by 138 nucleotides
BWI76_RS21675: BWI76_RS21675 - hypothetical protein, at 4,535,392 to 4,535,613
_RS21675
BWI76_RS21680: BWI76_RS21680 - antitoxin of the YeeV-YeeU toxin-antitoxin system, at 4,535,636 to 4,535,995
_RS21680
BWI76_RS21685: BWI76_RS21685 - hypothetical protein, at 4,536,045 to 4,536,419
_RS21685
BWI76_RS21690: BWI76_RS21690 - hypothetical protein, at 4,536,499 to 4,536,819
_RS21690
BWI76_RS21695: BWI76_RS21695 - glycosyl transferase family protein, at 4,536,958 to 4,537,947
_RS21695
Position (kb) 4536
4537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4535.587 kb on + strand, within BWI76_RS21675 at 4535.602 kb on + strand at 4535.605 kb on - strand at 4535.882 kb on - strand, within BWI76_RS21680 at 4535.892 kb on + strand, within BWI76_RS21680 at 4535.928 kb on - strand, within BWI76_RS21680 at 4536.044 kb on - strand at 4536.268 kb on - strand, within BWI76_RS21685 at 4536.400 kb on + strand at 4536.401 kb on + strand at 4536.401 kb on + strand at 4536.525 kb on - strand at 4536.588 kb on + strand, within BWI76_RS21690 at 4536.620 kb on + strand, within BWI76_RS21690 at 4536.846 kb on - strand at 4537.078 kb on + strand, within BWI76_RS21695 at 4537.083 kb on + strand, within BWI76_RS21695 at 4537.422 kb on + strand, within BWI76_RS21695 at 4537.623 kb on + strand, within BWI76_RS21695 at 4537.771 kb on - strand, within BWI76_RS21695 at 4537.776 kb on + strand, within BWI76_RS21695 at 4537.789 kb on + strand, within BWI76_RS21695
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL remove 4,535,587 + BWI76_RS21675 0.88 -0.5 4,535,602 + +0.2 4,535,605 - -0.4 4,535,882 - BWI76_RS21680 0.68 -0.9 4,535,892 + BWI76_RS21680 0.71 +1.9 4,535,928 - BWI76_RS21680 0.81 -0.0 4,536,044 - +1.8 4,536,268 - BWI76_RS21685 0.59 -0.7 4,536,400 + +0.6 4,536,401 + -0.1 4,536,401 + -0.9 4,536,525 - +0.6 4,536,588 + BWI76_RS21690 0.28 -2.1 4,536,620 + BWI76_RS21690 0.38 -0.6 4,536,846 - -1.4 4,537,078 + BWI76_RS21695 0.12 +2.1 4,537,083 + BWI76_RS21695 0.13 -0.1 4,537,422 + BWI76_RS21695 0.47 +1.4 4,537,623 + BWI76_RS21695 0.67 -0.3 4,537,771 - BWI76_RS21695 0.82 +1.8 4,537,776 + BWI76_RS21695 0.83 -0.6 4,537,789 + BWI76_RS21695 0.84 +1.3
Or see this region's nucleotide sequence