Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14920

Experiment: Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14915 and BWI76_RS14920 are separated by 427 nucleotidesBWI76_RS14920 and BWI76_RS14925 overlap by 4 nucleotidesBWI76_RS14925 and BWI76_RS14930 are separated by 24 nucleotides BWI76_RS14915: BWI76_RS14915 - hypothetical protein, at 3,126,469 to 3,126,975 _RS14915 BWI76_RS14920: BWI76_RS14920 - ABC transporter permease, at 3,127,403 to 3,128,410 _RS14920 BWI76_RS14925: BWI76_RS14925 - ABC transporter substrate-binding protein, at 3,128,407 to 3,129,363 _RS14925 BWI76_RS14930: BWI76_RS14930 - hypothetical protein, at 3,129,388 to 3,130,197 _RS14930 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -2 -1 0 1 2at 3126.456 kb on - strandat 3126.456 kb on - strandat 3126.583 kb on + strand, within BWI76_RS14915at 3126.591 kb on - strandat 3126.615 kb on - strand, within BWI76_RS14915at 3126.711 kb on - strandat 3126.713 kb on - strand, within BWI76_RS14915at 3126.877 kb on - strand, within BWI76_RS14915at 3126.882 kb on - strand, within BWI76_RS14915at 3126.891 kb on - strand, within BWI76_RS14915at 3126.983 kb on - strandat 3126.994 kb on - strandat 3127.086 kb on + strandat 3127.153 kb on - strandat 3127.155 kb on + strandat 3127.368 kb on + strandat 3127.376 kb on - strandat 3127.401 kb on + strandat 3127.426 kb on + strandat 3127.541 kb on - strand, within BWI76_RS14920at 3127.616 kb on + strand, within BWI76_RS14920at 3127.710 kb on - strand, within BWI76_RS14920at 3127.763 kb on + strand, within BWI76_RS14920at 3127.771 kb on - strand, within BWI76_RS14920at 3127.777 kb on - strand, within BWI76_RS14920at 3127.856 kb on + strand, within BWI76_RS14920at 3128.045 kb on + strand, within BWI76_RS14920at 3128.169 kb on - strand, within BWI76_RS14920at 3128.190 kb on + strand, within BWI76_RS14920at 3128.233 kb on - strand, within BWI76_RS14920at 3128.385 kb on - strandat 3128.672 kb on - strand, within BWI76_RS14925at 3128.743 kb on + strand, within BWI76_RS14925at 3128.910 kb on - strand, within BWI76_RS14925at 3128.915 kb on - strand, within BWI76_RS14925at 3129.255 kb on + strand, within BWI76_RS14925at 3129.288 kb on - strandat 3129.397 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
remove
3,126,456 - +0.6
3,126,456 - -1.0
3,126,583 + BWI76_RS14915 0.22 +0.1
3,126,591 - -1.6
3,126,615 - BWI76_RS14915 0.29 +0.0
3,126,711 - -1.0
3,126,713 - BWI76_RS14915 0.48 +1.2
3,126,877 - BWI76_RS14915 0.80 -1.3
3,126,882 - BWI76_RS14915 0.81 -1.3
3,126,891 - BWI76_RS14915 0.83 +0.6
3,126,983 - -0.3
3,126,994 - +1.0
3,127,086 + -1.0
3,127,153 - +0.2
3,127,155 + +0.6
3,127,368 + -0.0
3,127,376 - -2.0
3,127,401 + +0.4
3,127,426 + -1.0
3,127,541 - BWI76_RS14920 0.14 +0.5
3,127,616 + BWI76_RS14920 0.21 +2.0
3,127,710 - BWI76_RS14920 0.30 +0.6
3,127,763 + BWI76_RS14920 0.36 +1.0
3,127,771 - BWI76_RS14920 0.37 -0.2
3,127,777 - BWI76_RS14920 0.37 +0.9
3,127,856 + BWI76_RS14920 0.45 +0.7
3,128,045 + BWI76_RS14920 0.64 +0.8
3,128,169 - BWI76_RS14920 0.76 -1.1
3,128,190 + BWI76_RS14920 0.78 +0.4
3,128,233 - BWI76_RS14920 0.82 +0.4
3,128,385 - -1.8
3,128,672 - BWI76_RS14925 0.28 -0.4
3,128,743 + BWI76_RS14925 0.35 -0.6
3,128,910 - BWI76_RS14925 0.53 +0.9
3,128,915 - BWI76_RS14925 0.53 -1.3
3,129,255 + BWI76_RS14925 0.89 -0.7
3,129,288 - -0.0
3,129,397 + +0.1

Or see this region's nucleotide sequence