Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22880 and BWI76_RS22885 are separated by 149 nucleotides BWI76_RS22885 and BWI76_RS22890 are separated by 163 nucleotides
BWI76_RS22880: BWI76_RS22880 - L-serine ammonia-lyase, at 4,774,121 to 4,775,488
_RS22880
BWI76_RS22885: BWI76_RS22885 - aliphatic sulfonate ABC transporter substrate-binding protein, at 4,775,638 to 4,776,579
_RS22885
BWI76_RS22890: BWI76_RS22890 - 5,10-methylenetetrahydromethanopterin reductase, at 4,776,743 to 4,778,149
_RS22890
Position (kb) 4775
4776
4777 Strain fitness (log2 ratio) -1
0
1 at 4775.082 kb on + strand, within BWI76_RS22880 at 4775.252 kb on + strand, within BWI76_RS22880 at 4775.255 kb on - strand, within BWI76_RS22880 at 4775.356 kb on - strand at 4775.824 kb on - strand, within BWI76_RS22885 at 4775.934 kb on - strand, within BWI76_RS22885 at 4775.944 kb on - strand, within BWI76_RS22885 at 4776.081 kb on + strand, within BWI76_RS22885 at 4776.086 kb on + strand, within BWI76_RS22885 at 4776.117 kb on + strand, within BWI76_RS22885 at 4776.171 kb on + strand, within BWI76_RS22885 at 4776.249 kb on - strand, within BWI76_RS22885 at 4776.256 kb on - strand, within BWI76_RS22885 at 4776.266 kb on + strand, within BWI76_RS22885 at 4776.266 kb on - strand, within BWI76_RS22885 at 4776.266 kb on - strand, within BWI76_RS22885 at 4776.267 kb on - strand, within BWI76_RS22885 at 4776.459 kb on + strand, within BWI76_RS22885 at 4776.551 kb on + strand at 4776.573 kb on + strand at 4776.987 kb on + strand, within BWI76_RS22890 at 4776.987 kb on + strand, within BWI76_RS22890 at 4777.188 kb on - strand, within BWI76_RS22890 at 4777.243 kb on - strand, within BWI76_RS22890 at 4777.487 kb on - strand, within BWI76_RS22890 at 4777.569 kb on + strand, within BWI76_RS22890
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,775,082 + BWI76_RS22880 0.70 +0.0 4,775,252 + BWI76_RS22880 0.83 -1.0 4,775,255 - BWI76_RS22880 0.83 -0.3 4,775,356 - -0.5 4,775,824 - BWI76_RS22885 0.20 +0.2 4,775,934 - BWI76_RS22885 0.31 -1.1 4,775,944 - BWI76_RS22885 0.32 +0.1 4,776,081 + BWI76_RS22885 0.47 +0.9 4,776,086 + BWI76_RS22885 0.48 -1.3 4,776,117 + BWI76_RS22885 0.51 +0.3 4,776,171 + BWI76_RS22885 0.57 -0.1 4,776,249 - BWI76_RS22885 0.65 +0.4 4,776,256 - BWI76_RS22885 0.66 +0.3 4,776,266 + BWI76_RS22885 0.67 +0.7 4,776,266 - BWI76_RS22885 0.67 +0.2 4,776,266 - BWI76_RS22885 0.67 +0.2 4,776,267 - BWI76_RS22885 0.67 -0.6 4,776,459 + BWI76_RS22885 0.87 +0.4 4,776,551 + +0.9 4,776,573 + +0.5 4,776,987 + BWI76_RS22890 0.17 +0.3 4,776,987 + BWI76_RS22890 0.17 +0.0 4,777,188 - BWI76_RS22890 0.32 +0.1 4,777,243 - BWI76_RS22890 0.36 +0.4 4,777,487 - BWI76_RS22890 0.53 -0.2 4,777,569 + BWI76_RS22890 0.59 -0.7
Or see this region's nucleotide sequence