Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07220 and BWI76_RS07225 are separated by 39 nucleotides BWI76_RS07225 and BWI76_RS07230 are separated by 99 nucleotides
BWI76_RS07220: BWI76_RS07220 - oxidoreductase NAD-binding protein, at 1,518,853 to 1,519,884
_RS07220
BWI76_RS07225: BWI76_RS07225 - putative oxidoreductase, at 1,519,924 to 1,520,931
_RS07225
BWI76_RS07230: BWI76_RS07230 - transcriptional regulator, at 1,521,031 to 1,522,050
_RS07230
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1518.943 kb on + strand at 1518.985 kb on - strand, within BWI76_RS07220 at 1519.007 kb on - strand, within BWI76_RS07220 at 1519.056 kb on + strand, within BWI76_RS07220 at 1519.206 kb on + strand, within BWI76_RS07220 at 1519.337 kb on - strand, within BWI76_RS07220 at 1519.443 kb on - strand, within BWI76_RS07220 at 1519.466 kb on - strand, within BWI76_RS07220 at 1519.566 kb on + strand, within BWI76_RS07220 at 1519.901 kb on - strand at 1519.990 kb on + strand at 1520.042 kb on - strand, within BWI76_RS07225 at 1520.222 kb on + strand, within BWI76_RS07225 at 1520.230 kb on - strand, within BWI76_RS07225 at 1520.485 kb on - strand, within BWI76_RS07225 at 1521.307 kb on + strand, within BWI76_RS07230 at 1521.604 kb on + strand, within BWI76_RS07230 at 1521.782 kb on - strand, within BWI76_RS07230 at 1521.894 kb on + strand, within BWI76_RS07230
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,518,943 + -0.4 1,518,985 - BWI76_RS07220 0.13 -0.8 1,519,007 - BWI76_RS07220 0.15 +0.7 1,519,056 + BWI76_RS07220 0.20 -1.0 1,519,206 + BWI76_RS07220 0.34 -2.0 1,519,337 - BWI76_RS07220 0.47 -0.5 1,519,443 - BWI76_RS07220 0.57 +0.5 1,519,466 - BWI76_RS07220 0.59 +0.4 1,519,566 + BWI76_RS07220 0.69 -0.9 1,519,901 - -2.0 1,519,990 + +0.6 1,520,042 - BWI76_RS07225 0.12 -0.9 1,520,222 + BWI76_RS07225 0.30 -0.8 1,520,230 - BWI76_RS07225 0.30 -0.9 1,520,485 - BWI76_RS07225 0.56 -0.6 1,521,307 + BWI76_RS07230 0.27 -1.1 1,521,604 + BWI76_RS07230 0.56 -0.3 1,521,782 - BWI76_RS07230 0.74 -3.4 1,521,894 + BWI76_RS07230 0.85 +0.6
Or see this region's nucleotide sequence