Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27695 and BWI76_RS27700 are separated by 3 nucleotides BWI76_RS27700 and BWI76_RS27705 are separated by 50 nucleotides
BWI76_RS27695: BWI76_RS27695 - multidrug efflux RND transporter permease subunit, at 5,745,353 to 5,748,460
_RS27695
BWI76_RS27700: BWI76_RS27700 - multidrug transporter, at 5,748,464 to 5,749,828
_RS27700
BWI76_RS27705: BWI76_RS27705 - Bcr/CflA family drug resistance efflux transporter, at 5,749,879 to 5,751,045
_RS27705
Position (kb) 5748
5749
5750 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5747.536 kb on + strand, within BWI76_RS27695 at 5747.536 kb on + strand, within BWI76_RS27695 at 5747.558 kb on - strand, within BWI76_RS27695 at 5747.560 kb on + strand, within BWI76_RS27695 at 5747.604 kb on + strand, within BWI76_RS27695 at 5747.656 kb on - strand, within BWI76_RS27695 at 5747.866 kb on + strand at 5747.881 kb on - strand, within BWI76_RS27695 at 5748.054 kb on + strand, within BWI76_RS27695 at 5748.100 kb on + strand, within BWI76_RS27695 at 5748.115 kb on + strand, within BWI76_RS27695 at 5748.244 kb on - strand at 5748.524 kb on - strand at 5748.727 kb on - strand, within BWI76_RS27700 at 5748.766 kb on - strand, within BWI76_RS27700 at 5748.775 kb on + strand, within BWI76_RS27700 at 5748.827 kb on + strand, within BWI76_RS27700 at 5748.835 kb on - strand, within BWI76_RS27700 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.015 kb on - strand, within BWI76_RS27700 at 5749.321 kb on - strand, within BWI76_RS27700 at 5749.351 kb on + strand, within BWI76_RS27700 at 5749.439 kb on - strand, within BWI76_RS27700 at 5749.491 kb on + strand, within BWI76_RS27700 at 5749.638 kb on - strand, within BWI76_RS27700 at 5749.673 kb on + strand, within BWI76_RS27700 at 5749.751 kb on + strand at 5749.986 kb on + strand at 5750.039 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.045 kb on + strand, within BWI76_RS27705 at 5750.127 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.281 kb on + strand, within BWI76_RS27705 at 5750.357 kb on + strand, within BWI76_RS27705 at 5750.396 kb on + strand, within BWI76_RS27705 at 5750.403 kb on - strand at 5750.404 kb on - strand, within BWI76_RS27705 at 5750.521 kb on + strand, within BWI76_RS27705 at 5750.545 kb on - strand, within BWI76_RS27705 at 5750.559 kb on - strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.741 kb on + strand, within BWI76_RS27705
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,747,536 + BWI76_RS27695 0.70 +0.7 5,747,536 + BWI76_RS27695 0.70 -0.2 5,747,558 - BWI76_RS27695 0.71 +0.0 5,747,560 + BWI76_RS27695 0.71 -0.2 5,747,604 + BWI76_RS27695 0.72 -0.6 5,747,656 - BWI76_RS27695 0.74 +0.5 5,747,866 + +0.8 5,747,881 - BWI76_RS27695 0.81 -0.0 5,748,054 + BWI76_RS27695 0.87 -0.3 5,748,100 + BWI76_RS27695 0.88 -0.6 5,748,115 + BWI76_RS27695 0.89 +1.4 5,748,244 - -1.3 5,748,524 - +0.8 5,748,727 - BWI76_RS27700 0.19 +0.9 5,748,766 - BWI76_RS27700 0.22 -0.3 5,748,775 + BWI76_RS27700 0.23 +1.1 5,748,827 + BWI76_RS27700 0.27 -0.2 5,748,835 - BWI76_RS27700 0.27 +0.0 5,749,015 - BWI76_RS27700 0.40 -0.1 5,749,015 - BWI76_RS27700 0.40 -1.2 5,749,321 - BWI76_RS27700 0.63 +3.2 5,749,351 + BWI76_RS27700 0.65 +0.9 5,749,439 - BWI76_RS27700 0.71 -0.8 5,749,491 + BWI76_RS27700 0.75 +0.2 5,749,638 - BWI76_RS27700 0.86 -0.8 5,749,673 + BWI76_RS27700 0.89 +0.5 5,749,751 + -0.7 5,749,986 + +0.3 5,750,039 + BWI76_RS27705 0.14 -0.2 5,750,045 + BWI76_RS27705 0.14 -0.8 5,750,045 + BWI76_RS27705 0.14 -0.5 5,750,127 - BWI76_RS27705 0.21 -0.8 5,750,221 - BWI76_RS27705 0.29 +0.7 5,750,221 - BWI76_RS27705 0.29 +0.4 5,750,281 + BWI76_RS27705 0.34 +0.0 5,750,357 + BWI76_RS27705 0.41 +0.3 5,750,396 + BWI76_RS27705 0.44 +0.6 5,750,403 - -0.2 5,750,404 - BWI76_RS27705 0.45 +0.3 5,750,521 + BWI76_RS27705 0.55 -0.4 5,750,545 - BWI76_RS27705 0.57 +0.4 5,750,559 - BWI76_RS27705 0.58 +0.1 5,750,636 + BWI76_RS27705 0.65 +0.4 5,750,636 + BWI76_RS27705 0.65 +0.3 5,750,636 + BWI76_RS27705 0.65 +0.6 5,750,644 - BWI76_RS27705 0.66 -0.5 5,750,644 - BWI76_RS27705 0.66 +0.4 5,750,644 - BWI76_RS27705 0.66 -2.4 5,750,741 + BWI76_RS27705 0.74 -0.6
Or see this region's nucleotide sequence