Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10290 and BWI76_RS10295 are separated by 51 nucleotides BWI76_RS10295 and BWI76_RS10300 are separated by 164 nucleotides
BWI76_RS10290: BWI76_RS10290 - transcriptional regulator, at 2,178,829 to 2,179,725
_RS10290
BWI76_RS10295: BWI76_RS10295 - short chain dehydrogenase/reductase family oxidoreductase, at 2,179,777 to 2,180,562
_RS10295
BWI76_RS10300: BWI76_RS10300 - MFS transporter, at 2,180,727 to 2,182,163
_RS10300
Position (kb)
2179
2180
2181 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2178.842 kb on - strand at 2179.198 kb on + strand, within BWI76_RS10290 at 2179.198 kb on + strand, within BWI76_RS10290 at 2179.206 kb on - strand, within BWI76_RS10290 at 2179.206 kb on - strand, within BWI76_RS10290 at 2179.255 kb on + strand, within BWI76_RS10290 at 2179.499 kb on + strand, within BWI76_RS10290 at 2179.507 kb on - strand at 2179.520 kb on + strand at 2179.622 kb on + strand, within BWI76_RS10290 at 2180.288 kb on + strand, within BWI76_RS10295 at 2180.309 kb on + strand, within BWI76_RS10295 at 2180.453 kb on - strand, within BWI76_RS10295 at 2180.466 kb on - strand, within BWI76_RS10295 at 2180.807 kb on + strand at 2180.838 kb on + strand at 2181.111 kb on + strand, within BWI76_RS10300 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.508 kb on - strand, within BWI76_RS10300 at 2181.516 kb on + strand, within BWI76_RS10300
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,178,842 - +0.5 2,179,198 + BWI76_RS10290 0.41 -0.2 2,179,198 + BWI76_RS10290 0.41 +1.6 2,179,206 - BWI76_RS10290 0.42 -0.2 2,179,206 - BWI76_RS10290 0.42 +0.4 2,179,255 + BWI76_RS10290 0.47 -0.3 2,179,499 + BWI76_RS10290 0.75 +0.6 2,179,507 - -0.7 2,179,520 + -2.0 2,179,622 + BWI76_RS10290 0.88 +1.5 2,180,288 + BWI76_RS10295 0.65 -0.3 2,180,309 + BWI76_RS10295 0.68 +0.3 2,180,453 - BWI76_RS10295 0.86 +0.9 2,180,466 - BWI76_RS10295 0.88 +1.8 2,180,807 + -0.6 2,180,838 + +0.9 2,181,111 + BWI76_RS10300 0.27 +0.8 2,181,390 + BWI76_RS10300 0.46 +0.2 2,181,390 + BWI76_RS10300 0.46 +0.2 2,181,508 - BWI76_RS10300 0.54 +0.1 2,181,516 + BWI76_RS10300 0.55 +0.7
Or see this region's nucleotide sequence