Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09045 and BWI76_RS09050 are separated by 15 nucleotides BWI76_RS09050 and BWI76_RS09055 are separated by 298 nucleotides
BWI76_RS09045: BWI76_RS09045 - alpha-glucosidase, at 1,906,130 to 1,908,493
_RS09045
BWI76_RS09050: BWI76_RS09050 - MFS transporter, at 1,908,509 to 1,909,810
_RS09050
BWI76_RS09055: BWI76_RS09055 - LacI family transcriptional regulator, at 1,910,109 to 1,911,182
_RS09055
Position (kb)
1908
1909
1910 Strain fitness (log2 ratio)
-1
0
1
2 at 1907.574 kb on + strand, within BWI76_RS09045 at 1907.857 kb on - strand, within BWI76_RS09045 at 1907.929 kb on + strand, within BWI76_RS09045 at 1908.075 kb on - strand, within BWI76_RS09045 at 1908.227 kb on + strand, within BWI76_RS09045 at 1908.276 kb on - strand at 1908.424 kb on + strand at 1908.471 kb on - strand at 1908.550 kb on + strand at 1908.899 kb on + strand, within BWI76_RS09050 at 1909.031 kb on + strand, within BWI76_RS09050 at 1909.641 kb on + strand, within BWI76_RS09050 at 1909.735 kb on + strand at 1910.023 kb on + strand at 1910.023 kb on + strand at 1910.091 kb on + strand at 1910.159 kb on + strand at 1910.223 kb on + strand, within BWI76_RS09055 at 1910.231 kb on - strand, within BWI76_RS09055 at 1910.397 kb on - strand, within BWI76_RS09055 at 1910.418 kb on - strand, within BWI76_RS09055 at 1910.463 kb on + strand, within BWI76_RS09055 at 1910.725 kb on - strand, within BWI76_RS09055
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,907,574 + BWI76_RS09045 0.61 +0.7 1,907,857 - BWI76_RS09045 0.73 +0.3 1,907,929 + BWI76_RS09045 0.76 +0.2 1,908,075 - BWI76_RS09045 0.82 -1.1 1,908,227 + BWI76_RS09045 0.89 +2.5 1,908,276 - +0.1 1,908,424 + -1.2 1,908,471 - +0.8 1,908,550 + +0.6 1,908,899 + BWI76_RS09050 0.30 +0.7 1,909,031 + BWI76_RS09050 0.40 -0.3 1,909,641 + BWI76_RS09050 0.87 +1.3 1,909,735 + +0.4 1,910,023 + +0.2 1,910,023 + -0.9 1,910,091 + +0.2 1,910,159 + +0.0 1,910,223 + BWI76_RS09055 0.11 -0.1 1,910,231 - BWI76_RS09055 0.11 -0.2 1,910,397 - BWI76_RS09055 0.27 +0.5 1,910,418 - BWI76_RS09055 0.29 +0.8 1,910,463 + BWI76_RS09055 0.33 +1.0 1,910,725 - BWI76_RS09055 0.57 +0.1
Or see this region's nucleotide sequence