Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucK and fucU are separated by 1 nucleotides fucU and fucR are separated by 57 nucleotides fucR and ygdE are separated by 43 nucleotides
b2803: fucK - L-fuculokinase (NCBI), at 2,935,460 to 2,936,908
fucK
b2804: fucU - L-fucose mutarotase (NCBI), at 2,936,910 to 2,937,332
fucU
b2805: fucR - DNA-binding transcriptional activator (NCBI), at 2,937,390 to 2,938,121
fucR
b2806: ygdE - predicted methyltransferase (NCBI), at 2,938,165 to 2,939,265
ygdE
Position (kb)
2936
2937
2938 Strain fitness (log2 ratio)
-2
-1
0
1 at 2935.929 kb on + strand, within fucK at 2935.929 kb on + strand, within fucK at 2936.145 kb on - strand, within fucK at 2936.230 kb on + strand, within fucK at 2936.304 kb on + strand, within fucK at 2936.330 kb on + strand, within fucK at 2936.330 kb on + strand, within fucK at 2936.382 kb on - strand, within fucK at 2936.382 kb on - strand, within fucK at 2936.392 kb on - strand, within fucK at 2936.441 kb on + strand, within fucK at 2936.538 kb on + strand, within fucK at 2936.538 kb on + strand, within fucK at 2936.628 kb on + strand, within fucK at 2936.630 kb on + strand, within fucK at 2936.630 kb on + strand, within fucK at 2936.656 kb on + strand, within fucK at 2936.656 kb on + strand, within fucK at 2936.664 kb on - strand, within fucK at 2936.664 kb on - strand, within fucK at 2936.808 kb on - strand at 2936.845 kb on + strand at 2936.845 kb on + strand at 2936.974 kb on - strand, within fucU at 2936.974 kb on - strand, within fucU at 2937.103 kb on + strand, within fucU at 2937.103 kb on + strand, within fucU at 2937.173 kb on + strand, within fucU at 2937.434 kb on - strand at 2937.434 kb on - strand at 2937.439 kb on - strand at 2937.473 kb on - strand, within fucR at 2937.629 kb on + strand, within fucR at 2937.677 kb on - strand, within fucR at 2937.677 kb on - strand, within fucR at 2937.681 kb on + strand, within fucR at 2937.747 kb on - strand, within fucR at 2937.769 kb on + strand, within fucR at 2937.769 kb on + strand, within fucR at 2937.811 kb on - strand, within fucR at 2937.811 kb on - strand, within fucR at 2937.817 kb on + strand, within fucR at 2937.862 kb on + strand, within fucR at 2938.088 kb on + strand at 2938.132 kb on - strand at 2938.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 2,935,929 + fucK b2803 0.32 +0.0 2,935,929 + fucK b2803 0.32 +0.1 2,936,145 - fucK b2803 0.47 -0.0 2,936,230 + fucK b2803 0.53 -0.2 2,936,304 + fucK b2803 0.58 +0.3 2,936,330 + fucK b2803 0.60 -0.9 2,936,330 + fucK b2803 0.60 +0.8 2,936,382 - fucK b2803 0.64 -2.3 2,936,382 - fucK b2803 0.64 +0.8 2,936,392 - fucK b2803 0.64 +0.1 2,936,441 + fucK b2803 0.68 +1.6 2,936,538 + fucK b2803 0.74 -0.1 2,936,538 + fucK b2803 0.74 +0.3 2,936,628 + fucK b2803 0.81 +0.1 2,936,630 + fucK b2803 0.81 +0.2 2,936,630 + fucK b2803 0.81 -0.4 2,936,656 + fucK b2803 0.83 +0.3 2,936,656 + fucK b2803 0.83 -0.3 2,936,664 - fucK b2803 0.83 +1.6 2,936,664 - fucK b2803 0.83 -0.4 2,936,808 - -0.1 2,936,845 + -0.3 2,936,845 + +0.1 2,936,974 - fucU b2804 0.15 -1.2 2,936,974 - fucU b2804 0.15 +1.2 2,937,103 + fucU b2804 0.46 +0.2 2,937,103 + fucU b2804 0.46 -0.4 2,937,173 + fucU b2804 0.62 -1.4 2,937,434 - +0.5 2,937,434 - +0.6 2,937,439 - +0.6 2,937,473 - fucR b2805 0.11 +0.5 2,937,629 + fucR b2805 0.33 -0.2 2,937,677 - fucR b2805 0.39 +0.3 2,937,677 - fucR b2805 0.39 +0.3 2,937,681 + fucR b2805 0.40 +0.5 2,937,747 - fucR b2805 0.49 +1.2 2,937,769 + fucR b2805 0.52 +0.5 2,937,769 + fucR b2805 0.52 +0.4 2,937,811 - fucR b2805 0.58 -0.3 2,937,811 - fucR b2805 0.58 -0.2 2,937,817 + fucR b2805 0.58 -0.2 2,937,862 + fucR b2805 0.64 +0.3 2,938,088 + -0.3 2,938,132 - -0.7 2,938,204 - +1.2
Or see this region's nucleotide sequence