Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1101 and Atu1102 are separated by 1 nucleotides Atu1102 and Atu1103 are separated by 71 nucleotides Atu1103 and Atu1104 overlap by 1 nucleotides
Atu1101: Atu1101 - guanylate kinase, at 1,090,440 to 1,091,102
Atu1101
Atu1102: Atu1102 - hypothetical protein, at 1,091,104 to 1,091,727
Atu1102
Atu1103: Atu1103 - rRNA-adenine N6,N6-dimethyltransferase, at 1,091,799 to 1,092,629
Atu1103
Atu1104: Atu1104 - pyridoxal phosphate biosynthesis protein, at 1,092,629 to 1,093,651
Atu1104
Position (kb) 1091
1092
1093 Strain fitness (log2 ratio) -1
0
1 at 1091.178 kb on - strand, within Atu1102 at 1091.368 kb on - strand, within Atu1102 at 1091.421 kb on - strand, within Atu1102 at 1091.457 kb on + strand, within Atu1102 at 1091.481 kb on + strand, within Atu1102 at 1091.587 kb on + strand, within Atu1102 at 1091.742 kb on + strand at 1091.742 kb on + strand at 1091.814 kb on - strand at 1091.959 kb on - strand, within Atu1103 at 1091.988 kb on + strand, within Atu1103 at 1092.357 kb on - strand, within Atu1103 at 1092.659 kb on - strand at 1093.157 kb on - strand, within Atu1104
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,091,178 - Atu1102 0.12 +0.1 1,091,368 - Atu1102 0.42 +0.3 1,091,421 - Atu1102 0.51 -0.0 1,091,457 + Atu1102 0.57 -0.3 1,091,481 + Atu1102 0.60 -0.2 1,091,587 + Atu1102 0.77 +0.3 1,091,742 + -0.4 1,091,742 + +0.0 1,091,814 - +0.4 1,091,959 - Atu1103 0.19 -0.9 1,091,988 + Atu1103 0.23 +1.4 1,092,357 - Atu1103 0.67 -1.0 1,092,659 - -0.1 1,093,157 - Atu1104 0.52 +0.4
Or see this region's nucleotide sequence