Experiment: Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20035 and BWI76_RS20040 are separated by 15 nucleotides BWI76_RS20040 and BWI76_RS20045 are separated by 11 nucleotides BWI76_RS20045 and BWI76_RS20050 are separated by 105 nucleotides BWI76_RS20050 and BWI76_RS20055 overlap by 24 nucleotides
BWI76_RS20035: BWI76_RS20035 - hypothetical protein, at 4,197,551 to 4,198,531
_RS20035
BWI76_RS20040: BWI76_RS20040 - tricarboxylic transport membrane protein, at 4,198,547 to 4,198,978
_RS20040
BWI76_RS20045: BWI76_RS20045 - hypothetical protein, at 4,198,990 to 4,200,510
_RS20045
BWI76_RS20050: BWI76_RS20050 - hypothetical protein, at 4,200,616 to 4,201,239
_RS20050
BWI76_RS20055: BWI76_RS20055 - 2-succinylbenzoate-CoA ligase, at 4,201,216 to 4,202,607
_RS20055
Position (kb) 4198
4199
4200
4201 Strain fitness (log2 ratio) -2
-1
0
1 at 4198.263 kb on + strand, within BWI76_RS20035 at 4198.393 kb on + strand, within BWI76_RS20035 at 4198.677 kb on + strand, within BWI76_RS20040 at 4198.697 kb on + strand, within BWI76_RS20040 at 4198.737 kb on - strand, within BWI76_RS20040 at 4198.909 kb on - strand, within BWI76_RS20040 at 4199.204 kb on - strand, within BWI76_RS20045 at 4199.237 kb on + strand, within BWI76_RS20045 at 4199.343 kb on - strand, within BWI76_RS20045 at 4199.825 kb on + strand, within BWI76_RS20045 at 4200.145 kb on - strand, within BWI76_RS20045 at 4200.169 kb on - strand, within BWI76_RS20045 at 4200.844 kb on + strand, within BWI76_RS20050
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM remove 4,198,263 + BWI76_RS20035 0.73 -1.6 4,198,393 + BWI76_RS20035 0.86 -2.0 4,198,677 + BWI76_RS20040 0.30 +0.8 4,198,697 + BWI76_RS20040 0.35 -0.0 4,198,737 - BWI76_RS20040 0.44 -1.7 4,198,909 - BWI76_RS20040 0.84 -2.5 4,199,204 - BWI76_RS20045 0.14 +1.0 4,199,237 + BWI76_RS20045 0.16 +0.8 4,199,343 - BWI76_RS20045 0.23 +1.4 4,199,825 + BWI76_RS20045 0.55 +0.7 4,200,145 - BWI76_RS20045 0.76 -2.0 4,200,169 - BWI76_RS20045 0.78 +0.6 4,200,844 + BWI76_RS20050 0.37 -0.4
Or see this region's nucleotide sequence