Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10325

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,187,421	-		ABZR87_RS10320	0.37	+0.3
2,187,421	-		ABZR87_RS10320	0.37	-0.0
2,187,492	+		ABZR87_RS10320	0.43	+0.1
2,187,493	-		ABZR87_RS10320	0.43	-0.8
2,187,493	-		ABZR87_RS10320	0.43	+0.2
2,187,493	-		ABZR87_RS10320	0.43	+0.1
2,187,693	+		ABZR87_RS10320	0.58	+0.0
2,187,694	-		ABZR87_RS10320	0.58	+0.3
2,187,694	-		ABZR87_RS10320	0.58	-0.7
2,187,789	+		ABZR87_RS10320	0.66	+0.1
2,187,913	-		ABZR87_RS10320	0.75	+0.5
2,188,633	+		ABZR87_RS10325	0.16	-0.5
2,188,634	-		ABZR87_RS10325	0.16	-0.2
2,188,646	-		ABZR87_RS10325	0.17	-3.1
2,188,663	+		ABZR87_RS10325	0.17	-1.5
2,188,669	+		ABZR87_RS10325	0.18	+0.7
2,188,669	+		ABZR87_RS10325	0.18	-0.2
2,188,669	+		ABZR87_RS10325	0.18	+0.6
2,188,670	-		ABZR87_RS10325	0.18	+0.2
2,188,670	-		ABZR87_RS10325	0.18	-0.8
2,188,670	-		ABZR87_RS10325	0.18	-0.4
2,188,696	+		ABZR87_RS10325	0.19	+0.0
2,188,696	+		ABZR87_RS10325	0.19	+0.2
2,188,697	-		ABZR87_RS10325	0.19	+0.5
2,188,747	+		ABZR87_RS10325	0.21	+1.1
2,188,805	-		ABZR87_RS10325	0.23	-0.1
2,188,805	-		ABZR87_RS10325	0.23	-0.1
2,188,822	+		ABZR87_RS10325	0.24	-1.5
2,188,867	+		ABZR87_RS10325	0.26	-0.9
2,188,868	-		ABZR87_RS10325	0.26	-0.5
2,188,914	+		ABZR87_RS10325	0.28	-1.7
2,188,914	+		ABZR87_RS10325	0.28	-0.6
2,188,914	+		ABZR87_RS10325	0.28	-0.0
2,188,915	-		ABZR87_RS10325	0.28	-0.7
2,188,918	+		ABZR87_RS10325	0.28	+0.7
2,188,918	+		ABZR87_RS10325	0.28	-0.1
2,188,918	+		ABZR87_RS10325	0.28	-0.1
2,188,918	+		ABZR87_RS10325	0.28	+0.5
2,188,919	-		ABZR87_RS10325	0.28	-1.0
2,188,919	-		ABZR87_RS10325	0.28	-0.6
2,188,919	-		ABZR87_RS10325	0.28	+1.6
2,188,930	+		ABZR87_RS10325	0.28	+0.6
2,188,966	+		ABZR87_RS10325	0.30	+0.1
2,188,969	+		ABZR87_RS10325	0.30	-0.9
2,188,969	+		ABZR87_RS10325	0.30	+0.3
2,188,970	-		ABZR87_RS10325	0.30	+0.3
2,188,970	-		ABZR87_RS10325	0.30	+0.5
2,189,016	+		ABZR87_RS10325	0.32	+0.1
2,189,016	+		ABZR87_RS10325	0.32	-1.5
2,189,086	+		ABZR87_RS10325	0.35	+0.6
2,189,086	+		ABZR87_RS10325	0.35	+0.9
2,189,087	-		ABZR87_RS10325	0.35	-0.5
2,189,087	-		ABZR87_RS10325	0.35	+0.3
2,189,187	+		ABZR87_RS10325	0.39	-0.3
2,189,187	+		ABZR87_RS10325	0.39	-0.8
2,189,188	-		ABZR87_RS10325	0.39	-0.5
2,189,188	-		ABZR87_RS10325	0.39	-0.0
2,189,210	-		ABZR87_RS10325	0.40	-0.4
2,189,210	-		ABZR87_RS10325	0.40	-2.7
2,189,267	-		ABZR87_RS10325	0.42	-0.1
2,189,267	-		ABZR87_RS10325	0.42	+0.5
2,189,267	-		ABZR87_RS10325	0.42	-0.2
2,189,705	-		ABZR87_RS10325	0.61	-0.8
2,189,705	-		ABZR87_RS10325	0.61	+0.1
2,189,731	+		ABZR87_RS10325	0.62	+0.1
2,189,731	+		ABZR87_RS10325	0.62	-0.3
2,189,731	+		ABZR87_RS10325	0.62	-0.1
2,189,732	-		ABZR87_RS10325	0.62	+0.0
2,189,732	-		ABZR87_RS10325	0.62	-0.1
2,189,732	-		ABZR87_RS10325	0.62	+0.5
2,189,945	-		ABZR87_RS10325	0.71	-0.5
2,189,945	-		ABZR87_RS10325	0.71	+0.8
2,190,010	+		ABZR87_RS10325	0.73	+0.8
2,190,010	+		ABZR87_RS10325	0.73	-0.8
2,190,010	+		ABZR87_RS10325	0.73	-0.6
2,190,010	+		ABZR87_RS10325	0.73	+0.0
2,190,011	-		ABZR87_RS10325	0.73	-0.8
2,190,011	-		ABZR87_RS10325	0.73	-0.3
2,190,011	-		ABZR87_RS10325	0.73	-0.0
2,190,094	+		ABZR87_RS10325	0.77	-0.7
2,190,178	+		ABZR87_RS10325	0.80	-1.1
2,190,179	-		ABZR87_RS10325	0.80	-0.4
2,190,501	-				-2.4
2,190,652	+				-0.1
2,190,740	+				-0.2
2,190,793	+				+0.2
2,190,889	+		ABZR87_RS10330	0.12	+0.9
2,190,922	+		ABZR87_RS10330	0.14	-0.1
2,190,922	+		ABZR87_RS10330	0.14	+0.3
2,190,922	+		ABZR87_RS10330	0.14	+0.8
2,190,923	-		ABZR87_RS10330	0.14	-0.3
2,190,923	-		ABZR87_RS10330	0.14	-1.0
2,190,964	+		ABZR87_RS10330	0.18	+0.1
2,191,078	+		ABZR87_RS10330	0.27	+0.7
2,191,078	+		ABZR87_RS10330	0.27	+1.3
2,191,078	+		ABZR87_RS10330	0.27	+2.6
2,191,079	-		ABZR87_RS10330	0.27	-0.9
2,191,102	+		ABZR87_RS10330	0.29	-0.4
2,191,102	+		ABZR87_RS10330	0.29	-1.2
2,191,102	+		ABZR87_RS10330	0.29	+0.9
2,191,102	+		ABZR87_RS10330	0.29	-0.0
2,191,103	-		ABZR87_RS10330	0.29	-0.4
2,191,103	-		ABZR87_RS10330	0.29	+0.1
2,191,129	+		ABZR87_RS10330	0.32	-0.1
2,191,130	-		ABZR87_RS10330	0.32	+0.7
2,191,130	-		ABZR87_RS10330	0.32	+0.3
2,191,130	-		ABZR87_RS10330	0.32	-0.0
2,191,130	-		ABZR87_RS10330	0.32	+0.6
2,191,147	+		ABZR87_RS10330	0.33	-0.5
2,191,148	-		ABZR87_RS10330	0.33	-1.0
2,191,255	+		ABZR87_RS10330	0.42	+0.5
2,191,256	-		ABZR87_RS10330	0.42	-0.2
2,191,256	-		ABZR87_RS10330	0.42	+0.1
2,191,256	-		ABZR87_RS10330	0.42	+2.0
2,191,256	-		ABZR87_RS10330	0.42	-0.2
2,191,360	+		ABZR87_RS10330	0.51	+2.4
2,191,361	-		ABZR87_RS10330	0.51	+0.5
2,191,366	+		ABZR87_RS10330	0.51	+0.2
2,191,532	-		ABZR87_RS10330	0.65	-0.1
2,191,533	+		ABZR87_RS10330	0.65	-1.0
2,191,533	+		ABZR87_RS10330	0.65	+0.2
2,191,534	-		ABZR87_RS10330	0.65	+0.1
2,191,534	-		ABZR87_RS10330	0.65	-0.3
2,191,579	+		ABZR87_RS10330	0.69	-1.3
2,191,579	+		ABZR87_RS10330	0.69	+0.3
2,191,579	+		ABZR87_RS10330	0.69	-1.5
2,191,580	-		ABZR87_RS10330	0.69	-0.5
2,191,580	-		ABZR87_RS10330	0.69	+0.5
2,191,627	-		ABZR87_RS10330	0.73	-0.3
2,191,648	+		ABZR87_RS10330	0.74	+1.9
2,191,648	+		ABZR87_RS10330	0.74	+1.1
2,191,649	-		ABZR87_RS10330	0.75	-0.8