Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20135 and ABZR87_RS20140 are separated by 25 nucleotides ABZR87_RS20140 and ABZR87_RS20145 are separated by 11 nucleotides
ABZR87_RS20135: ABZR87_RS20135 - M15 family metallopeptidase, at 899,067 to 899,924
_RS20135
ABZR87_RS20140: ABZR87_RS20140 - PAAR domain-containing protein, at 899,950 to 900,219
_RS20140
ABZR87_RS20145: ABZR87_RS20145 - hypothetical protein, at 900,231 to 901,715
_RS20145
Position (kb) 899
900
901 Strain fitness (log2 ratio) -2
-1
0
1 at 898.955 kb on + strand at 898.965 kb on + strand at 898.966 kb on - strand at 899.019 kb on + strand at 899.066 kb on + strand at 899.091 kb on + strand at 899.091 kb on + strand at 899.092 kb on - strand at 899.092 kb on - strand at 899.287 kb on + strand, within ABZR87_RS20135 at 899.577 kb on + strand, within ABZR87_RS20135 at 899.578 kb on - strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.803 kb on - strand, within ABZR87_RS20135 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.354 kb on + strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.605 kb on + strand, within ABZR87_RS20145 at 900.605 kb on + strand, within ABZR87_RS20145
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 898,955 + -0.1 898,965 + -2.1 898,966 - +0.6 899,019 + -0.8 899,066 + +0.2 899,091 + -0.6 899,091 + +0.9 899,092 - +1.6 899,092 - +0.7 899,287 + ABZR87_RS20135 0.26 +0.8 899,577 + ABZR87_RS20135 0.59 +0.1 899,578 - ABZR87_RS20135 0.60 +0.2 899,703 + ABZR87_RS20135 0.74 -1.9 899,703 + ABZR87_RS20135 0.74 +0.5 899,703 + ABZR87_RS20135 0.74 -0.1 899,703 + ABZR87_RS20135 0.74 -1.8 899,703 + ABZR87_RS20135 0.74 -2.0 899,703 + ABZR87_RS20135 0.74 +1.5 899,703 + ABZR87_RS20135 0.74 +0.6 899,704 - ABZR87_RS20135 0.74 +0.7 899,704 - ABZR87_RS20135 0.74 -0.7 899,704 - ABZR87_RS20135 0.74 -0.5 899,704 - ABZR87_RS20135 0.74 -0.3 899,704 - ABZR87_RS20135 0.74 -1.0 899,803 - ABZR87_RS20135 0.86 -0.1 900,094 - ABZR87_RS20140 0.53 -0.4 900,094 - ABZR87_RS20140 0.53 -0.9 900,354 + -0.5 900,355 - -1.3 900,355 - -0.2 900,355 - +0.5 900,355 - +0.8 900,355 - +0.1 900,605 + ABZR87_RS20145 0.25 +0.5 900,605 + ABZR87_RS20145 0.25 +0.1
Or see this region's nucleotide sequence