Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19540

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19535 and ABZR87_RS19540 are separated by 9 nucleotidesABZR87_RS19540 and ABZR87_RS19545 overlap by 4 nucleotides ABZR87_RS19535: ABZR87_RS19535 - type II and III secretion system protein family protein, at 754,470 to 755,834 _RS19535 ABZR87_RS19540: ABZR87_RS19540 - CpaE family protein, at 755,844 to 757,187 _RS19540 ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539 _RS19545 Position (kb) 755 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.867 kb on + strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.868 kb on - strand, within ABZR87_RS19535at 754.869 kb on + strand, within ABZR87_RS19535at 755.343 kb on + strand, within ABZR87_RS19535at 755.343 kb on + strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.344 kb on - strand, within ABZR87_RS19535at 755.501 kb on + strand, within ABZR87_RS19535at 755.567 kb on - strand, within ABZR87_RS19535at 755.637 kb on + strand, within ABZR87_RS19535at 755.637 kb on + strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.638 kb on - strand, within ABZR87_RS19535at 755.672 kb on + strand, within ABZR87_RS19535at 755.673 kb on - strand, within ABZR87_RS19535at 755.832 kb on + strandat 755.832 kb on + strandat 755.833 kb on - strandat 755.833 kb on - strandat 755.833 kb on - strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.850 kb on + strandat 755.851 kb on - strandat 755.851 kb on - strandat 755.851 kb on - strandat 755.851 kb on - strandat 756.058 kb on + strand, within ABZR87_RS19540at 756.058 kb on + strand, within ABZR87_RS19540at 756.058 kb on + strand, within ABZR87_RS19540at 756.460 kb on - strand, within ABZR87_RS19540at 756.460 kb on - strand, within ABZR87_RS19540at 756.854 kb on + strand, within ABZR87_RS19540at 756.854 kb on + strand, within ABZR87_RS19540at 756.854 kb on + strand, within ABZR87_RS19540at 756.996 kb on + strand, within ABZR87_RS19540at 756.996 kb on + strand, within ABZR87_RS19540at 756.997 kb on - strand, within ABZR87_RS19540at 756.997 kb on - strand, within ABZR87_RS19540at 757.378 kb on + strand, within ABZR87_RS19545at 757.378 kb on + strand, within ABZR87_RS19545at 757.379 kb on - strand, within ABZR87_RS19545at 757.529 kb on + strand, within ABZR87_RS19545at 757.529 kb on + strand, within ABZR87_RS19545at 757.529 kb on + strand, within ABZR87_RS19545at 757.529 kb on + strand, within ABZR87_RS19545at 757.530 kb on - strand, within ABZR87_RS19545at 757.530 kb on - strand, within ABZR87_RS19545at 757.530 kb on - strand, within ABZR87_RS19545at 757.530 kb on - strand, within ABZR87_RS19545at 757.530 kb on - strand, within ABZR87_RS19545at 757.901 kb on + strand, within ABZR87_RS19545at 757.902 kb on - strand, within ABZR87_RS19545at 757.902 kb on - strand, within ABZR87_RS19545at 758.129 kb on - strand, within ABZR87_RS19545

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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754,867 + ABZR87_RS19535 0.29 -1.4
754,867 + ABZR87_RS19535 0.29 -1.1
754,867 + ABZR87_RS19535 0.29 -1.3
754,867 + ABZR87_RS19535 0.29 +0.5
754,868 - ABZR87_RS19535 0.29 -1.2
754,868 - ABZR87_RS19535 0.29 -0.2
754,868 - ABZR87_RS19535 0.29 -1.8
754,868 - ABZR87_RS19535 0.29 -2.1
754,868 - ABZR87_RS19535 0.29 -1.7
754,868 - ABZR87_RS19535 0.29 +0.0
754,868 - ABZR87_RS19535 0.29 -1.1
754,868 - ABZR87_RS19535 0.29 -3.4
754,868 - ABZR87_RS19535 0.29 +0.0
754,868 - ABZR87_RS19535 0.29 -0.4
754,868 - ABZR87_RS19535 0.29 -1.0
754,868 - ABZR87_RS19535 0.29 -1.1
754,869 + ABZR87_RS19535 0.29 -0.3
755,343 + ABZR87_RS19535 0.64 -0.6
755,343 + ABZR87_RS19535 0.64 -0.9
755,344 - ABZR87_RS19535 0.64 -0.1
755,344 - ABZR87_RS19535 0.64 -1.1
755,344 - ABZR87_RS19535 0.64 -0.1
755,344 - ABZR87_RS19535 0.64 +0.3
755,501 + ABZR87_RS19535 0.76 +0.4
755,567 - ABZR87_RS19535 0.80 +0.2
755,637 + ABZR87_RS19535 0.85 -1.0
755,637 + ABZR87_RS19535 0.85 +0.1
755,638 - ABZR87_RS19535 0.86 -0.4
755,638 - ABZR87_RS19535 0.86 -0.7
755,638 - ABZR87_RS19535 0.86 -1.2
755,638 - ABZR87_RS19535 0.86 -1.1
755,638 - ABZR87_RS19535 0.86 -1.5
755,672 + ABZR87_RS19535 0.88 -0.9
755,673 - ABZR87_RS19535 0.88 +0.2
755,832 + -0.3
755,832 + +0.4
755,833 - -2.2
755,833 - -0.7
755,833 - -1.2
755,850 + -1.4
755,850 + -1.0
755,850 + +1.2
755,850 + -0.2
755,851 - -0.5
755,851 - +0.4
755,851 - +0.6
755,851 - -0.5
756,058 + ABZR87_RS19540 0.16 -1.1
756,058 + ABZR87_RS19540 0.16 -0.9
756,058 + ABZR87_RS19540 0.16 -0.4
756,460 - ABZR87_RS19540 0.46 -0.6
756,460 - ABZR87_RS19540 0.46 -0.4
756,854 + ABZR87_RS19540 0.75 -2.0
756,854 + ABZR87_RS19540 0.75 -0.1
756,854 + ABZR87_RS19540 0.75 -0.6
756,996 + ABZR87_RS19540 0.86 +0.3
756,996 + ABZR87_RS19540 0.86 -1.5
756,997 - ABZR87_RS19540 0.86 -0.6
756,997 - ABZR87_RS19540 0.86 -0.1
757,378 + ABZR87_RS19545 0.14 +0.2
757,378 + ABZR87_RS19545 0.14 +0.2
757,379 - ABZR87_RS19545 0.14 -1.5
757,529 + ABZR87_RS19545 0.25 -0.8
757,529 + ABZR87_RS19545 0.25 -1.4
757,529 + ABZR87_RS19545 0.25 -0.4
757,529 + ABZR87_RS19545 0.25 +0.2
757,530 - ABZR87_RS19545 0.26 +0.4
757,530 - ABZR87_RS19545 0.26 +0.6
757,530 - ABZR87_RS19545 0.26 -0.7
757,530 - ABZR87_RS19545 0.26 -0.9
757,530 - ABZR87_RS19545 0.26 -1.0
757,901 + ABZR87_RS19545 0.53 +1.4
757,902 - ABZR87_RS19545 0.53 -1.3
757,902 - ABZR87_RS19545 0.53 -1.1
758,129 - ABZR87_RS19545 0.70 +1.3

Or see this region's nucleotide sequence