Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18835

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotidesABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotidesABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotides ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022 _RS18825 ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335 _RS18830 ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453 _RS18835 ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838 _RS18840 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 577.928 kb on + strandat 577.928 kb on + strandat 577.928 kb on + strandat 578.039 kb on + strandat 578.040 kb on - strandat 578.040 kb on - strandat 578.065 kb on - strand, within ABZR87_RS18830at 578.094 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.151 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.221 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.313 kb on + strandat 578.313 kb on + strandat 578.314 kb on - strandat 578.314 kb on - strandat 578.369 kb on + strandat 578.370 kb on - strandat 578.370 kb on - strandat 578.421 kb on - strandat 578.426 kb on + strandat 578.426 kb on + strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.429 kb on + strandat 578.465 kb on + strandat 578.466 kb on - strandat 578.466 kb on - strandat 578.471 kb on + strandat 578.471 kb on + strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.481 kb on - strandat 578.600 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.022 kb on + strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.179 kb on + strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.350 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.369 kb on - strandat 579.565 kb on + strandat 579.565 kb on + strandat 579.565 kb on + strandat 579.566 kb on - strandat 579.566 kb on - strandat 579.583 kb on + strandat 579.583 kb on + strandat 579.604 kb on + strand, within ABZR87_RS18840at 579.604 kb on + strand, within ABZR87_RS18840at 579.604 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.613 kb on - strand, within ABZR87_RS18840at 579.616 kb on + strand, within ABZR87_RS18840at 579.617 kb on - strand, within ABZR87_RS18840at 579.688 kb on + strand, within ABZR87_RS18840at 579.689 kb on - strand, within ABZR87_RS18840at 579.689 kb on - strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.961 kb on + strand, within ABZR87_RS18840at 579.961 kb on + strand, within ABZR87_RS18840at 580.229 kb on - strand, within ABZR87_RS18840at 580.367 kb on - strand, within ABZR87_RS18840

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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577,928 + +0.2
577,928 + +0.0
577,928 + -0.1
578,039 + -0.0
578,040 - -1.4
578,040 - -0.5
578,065 - ABZR87_RS18830 0.11 +0.4
578,094 + ABZR87_RS18830 0.21 +0.5
578,142 + ABZR87_RS18830 0.37 -0.2
578,142 + ABZR87_RS18830 0.37 +0.6
578,151 + ABZR87_RS18830 0.40 +0.3
578,220 + ABZR87_RS18830 0.62 +0.4
578,220 + ABZR87_RS18830 0.62 -0.0
578,221 - ABZR87_RS18830 0.62 +1.0
578,275 - ABZR87_RS18830 0.80 +0.4
578,275 - ABZR87_RS18830 0.80 +1.0
578,313 + +0.9
578,313 + +0.6
578,314 - +1.1
578,314 - +0.4
578,369 + +0.3
578,370 - -0.1
578,370 - -1.4
578,421 - +0.5
578,426 + +1.1
578,426 + -0.1
578,427 - +0.4
578,427 - +0.2
578,427 - +0.0
578,427 - -0.6
578,427 - -0.7
578,429 + -0.3
578,465 + +0.5
578,466 - +2.0
578,466 - +0.0
578,471 + -0.7
578,471 + -1.0
578,472 - -0.2
578,472 - -0.4
578,472 - +0.7
578,481 - +0.1
578,600 + ABZR87_RS18835 0.17 -1.7
579,020 + ABZR87_RS18835 0.58 -1.9
579,020 + ABZR87_RS18835 0.58 -0.3
579,020 + ABZR87_RS18835 0.58 -0.6
579,020 + ABZR87_RS18835 0.58 -1.6
579,020 + ABZR87_RS18835 0.58 -0.3
579,020 + ABZR87_RS18835 0.58 -2.1
579,020 + ABZR87_RS18835 0.58 -2.2
579,020 + ABZR87_RS18835 0.58 -1.0
579,020 + ABZR87_RS18835 0.58 -0.7
579,021 - ABZR87_RS18835 0.58 -1.4
579,021 - ABZR87_RS18835 0.58 -1.8
579,021 - ABZR87_RS18835 0.58 +0.6
579,021 - ABZR87_RS18835 0.58 -2.2
579,021 - ABZR87_RS18835 0.58 -0.8
579,021 - ABZR87_RS18835 0.58 -0.8
579,021 - ABZR87_RS18835 0.58 -0.6
579,021 - ABZR87_RS18835 0.58 +0.3
579,021 - ABZR87_RS18835 0.58 -1.1
579,022 + ABZR87_RS18835 0.58 -1.9
579,023 - ABZR87_RS18835 0.58 -2.5
579,023 - ABZR87_RS18835 0.58 -0.9
579,071 + ABZR87_RS18835 0.63 -1.3
579,071 + ABZR87_RS18835 0.63 -0.4
579,071 + ABZR87_RS18835 0.63 -0.8
579,072 - ABZR87_RS18835 0.63 -0.1
579,072 - ABZR87_RS18835 0.63 -1.0
579,072 - ABZR87_RS18835 0.63 +0.2
579,072 - ABZR87_RS18835 0.63 -0.6
579,072 - ABZR87_RS18835 0.63 -0.4
579,179 + ABZR87_RS18835 0.73 +0.2
579,180 - ABZR87_RS18835 0.73 -1.4
579,180 - ABZR87_RS18835 0.73 -0.3
579,180 - ABZR87_RS18835 0.73 +0.0
579,350 + -2.5
579,368 + -0.2
579,368 + -0.2
579,368 + -1.9
579,368 + +0.6
579,368 + -0.9
579,369 - -1.2
579,565 + -0.0
579,565 + -1.9
579,565 + -1.3
579,566 - +2.0
579,566 - -1.7
579,583 + -0.6
579,583 + -0.6
579,604 + ABZR87_RS18840 0.11 -1.0
579,604 + ABZR87_RS18840 0.11 -0.6
579,604 + ABZR87_RS18840 0.11 +0.4
579,612 + ABZR87_RS18840 0.12 -1.1
579,612 + ABZR87_RS18840 0.12 -1.6
579,612 + ABZR87_RS18840 0.12 +0.4
579,612 + ABZR87_RS18840 0.12 -0.6
579,613 - ABZR87_RS18840 0.12 -0.4
579,616 + ABZR87_RS18840 0.12 -0.2
579,617 - ABZR87_RS18840 0.12 -1.4
579,688 + ABZR87_RS18840 0.17 +0.0
579,689 - ABZR87_RS18840 0.17 -0.8
579,689 - ABZR87_RS18840 0.17 -0.8
579,724 + ABZR87_RS18840 0.20 -2.3
579,724 + ABZR87_RS18840 0.20 -1.3
579,724 + ABZR87_RS18840 0.20 -0.4
579,724 + ABZR87_RS18840 0.20 -1.1
579,724 + ABZR87_RS18840 0.20 -1.4
579,725 - ABZR87_RS18840 0.20 -0.8
579,725 - ABZR87_RS18840 0.20 -1.2
579,725 - ABZR87_RS18840 0.20 -3.4
579,725 - ABZR87_RS18840 0.20 -0.0
579,961 + ABZR87_RS18840 0.37 +0.2
579,961 + ABZR87_RS18840 0.37 -0.6
580,229 - ABZR87_RS18840 0.56 +0.5
580,367 - ABZR87_RS18840 0.66 -1.4

Or see this region's nucleotide sequence